Os08g0143400

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Revision as of 12:46, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0143400| Description = SWIRM domain containing protein| Version = NM_001067511.1 GI:115474758 GeneID:4344644| Length = 3740 bp| Definition...")
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Gene Name

Os08g0143400

Description

SWIRM domain containing protein

Version

NM_001067511.1 GI:115474758 GeneID:4344644

Length

3740 bp

Definition

Oryza sativa Japonica Group Os08g0143400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:2384540..2388279

Sequence Coding Region

2384917..2385671,2386693..2388229

Expression

GEO Profiles:Os08g0143400

Genome Context

<gbrowseImage1> name=NC_008401:2384540..2388279 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:2384540..2388279 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgtcgtcgtcgcggcggccggcgaggagggcggcgttgacggcgaggtcgtcgtacgacgagtcgctggtggacgccgagctggagtcctacctcgggaacgccaggtcgcggcggatcagccggctgcgccgcctctccgccgacgagcggcagcgggagacggagacggaggcgctaatagcgctctcgctgggcttccccattgacgagctgctccccgccgagcggcccctcctgccggcccccgtcgccgccgcccccaacgactacatcgtcgtccgcaaccacatcctcgcctcgtggcgcgccgacccgcgggtgccgctcccgcgctcgcgcgtgcaggagaccgtcgccgccagctacgacaaccttgtcgccgtggcgcacgggttcctcgcccgggagggccacatcaacttcggcgtctccgccgcgttccccgcctccccaccacccgatgcgccgcagcgcctcgccgcatccgtgctcgtcgtcggcgccggtctcgccggcctcgccgccgcgcgccagctgctccgattcggcctccgcgtgctcgtcctcgagggccgcgcccgccccggcggccgcgtctacaccactcatctcggcggggaccaggccgccgttgagctcggcggcagcgtcatcaccggcatccacaccaacccgctcggcgtgctcgccaggcagctcgggattccactccacaaggtgcgagacagttgcccgctctaccaccacgacggccgcaccgtggacatgaagctggacaggagcatggatctggtgttcaacacgcttctagaacacgccacccggctgcgagagtatctcaagaaggcagccgaggggatctcgctaggggaaggtatagagaggctgagacgcttttacaaggtggcgaaaagcgtcgaggagagggaggttctggactggcatttggctaacctggaattctccaatgccggctgcctatcggagctctcgctcgcgcactgggaccaggatgaccagtatgagatggggggagaccattgcttcctagccggagggaatgcgaggctggtacacgcattgtgcgatggtgtgccggtgttgtatgagaagacggtgaagcggattgagcatggggaggatggggtgagcatcaccgtggaaggaggccaggttttcaaggctgacatggcactctgcactgctccacttggagtgctcaagagcaggagcatcatttttgaaccggagttgccagagaggaagcttgaagcaatccagaggttggggtttgggttgttgaacaaagtcgccatggtgtttccccatgtattttgggatgaggagattgacacatttgggtgtttgaataaggagaggagcaagcgtggcgagttctttctcttctacagctaccacactgtctctggtggtgcggtacttatcgcacttgttgcgggagaagctgctttggagtttgaaaaggttgatcctgctgtagcacttcatagggtccttggtattcttaaaggtatctatggccccaaaggtgttacagtgcctgatcccattcaatcatgttgcacaagatggggtagtgatcctctttgctcaggttcatactctcacatcagagttgggtcttctggcactgactatgatattctcgctgagagcgtcaatgaccggttattctttgctggagaagcaacaaatcgtgcataccctgcaacaatgcatggagctttattgagtggactaagggaagcttccaagattctccatgcttcggaaagtagattgaattctgattataagaagtatgccctgcagaaaagcatcagacttataaataatgtactggacgaccttttcatggagccagatctagaatgtggaagattctcgttcgtgttctcctatattacacctgaggaggaacaggctccgggattggctaggattacacttgagaagcctttgcttctgccttccaagaaacgcaaagtaaagggtaatcagaaggatcaggaccctgtggctgagaagatagaccaagaggtgttttatttatacgccaccgtctcgcaagagcaagcaactgaactattggaatgcgacaatgataaaagtaggatagcagttctatgcaaagatcttggtgttaaactaatgggttacgacagtacatacgatgtatgtagtcatctgatttctagcatctcgagagctcagaaagccaggaaaaggttgcagggaccgaagagcttgaaaaccggactttga</cdnaseq>

Protein Sequence

<aaseq>MSSSSRRPARRAALTARSSYDESLVDAELESYLGNARSRRISRL RRLSADERQRETETEALIALSLGFPIDELLPAERPLLPAPVAAAPNDYIVVRNHILAS WRADPRVPLPRSRVQETVAASYDNLVAVAHGFLAREGHINFGVSAAFPASPPPDAPQR LAASVLVVGAGLAGLAAARQLLRFGLRVLVLEGRARPGGRVYTTHLGGDQAAVELGGS VITGIHTNPLGVLARQLGIPLHKVRDSCPLYHHDGRTVDMKLDRSMDLVFNTLLEHAT RLREYLKKAAEGISLGEGIERLRRFYKVAKSVEEREVLDWHLANLEFSNAGCLSELSL AHWDQDDQYEMGGDHCFLAGGNARLVHALCDGVPVLYEKTVKRIEHGEDGVSITVEGG QVFKADMALCTAPLGVLKSRSIIFEPELPERKLEAIQRLGFGLLNKVAMVFPHVFWDE EIDTFGCLNKERSKRGEFFLFYSYHTVSGGAVLIALVAGEAALEFEKVDPAVALHRVL GILKGIYGPKGVTVPDPIQSCCTRWGSDPLCSGSYSHIRVGSSGTDYDILAESVNDRL FFAGEATNRAYPATMHGALLSGLREASKILHASESRLNSDYKKYALQKSIRLINNVLD DLFMEPDLECGRFSFVFSYITPEEEQAPGLARITLEKPLLLPSKKRKVKGNQKDQDPV AEKIDQEVFYLYATVSQEQATELLECDNDKSRIAVLCKDLGVKLMGYDSTYDVCSHLI SSISRAQKARKRLQGPKSLKTGL</aaseq>

Gene Sequence

<dnaseqindica>2609..3363#51..1587#tctcccctcgcctccgcgaagcgagagaaaccccaacctcgtcggcggcgatgtcgtcgtcgtcgcggcggccggcgaggagggcggcgttgacggcgaggtcgtcgtacgacgagtcgctggtggacgccgagctggagtcctacctcgggaacgccaggtcgcggcggatcagccggctgcgccgcctctccgccgacgagcggcagcgggagacggagacggaggcgctaatagcgctctcgctgggcttccccattgacgagctgctccccgccgagcggcccctcctgccggcccccgtcgccgccgcccccaacgactacatcgtcgtccgcaaccacatcctcgcctcgtggcgcgccgacccgcgggtgccgctcccgcgctcgcgcgtgcaggagaccgtcgccgccagctacgacaaccttgtcgccgtggcgcacgggttcctcgcccgggagggccacatcaacttcggcgtctccgccgcgttccccgcctccccaccacccgatgcgccgcagcgcctcgccgcatccgtgctcgtcgtcggcgccggtctcgccggcctcgccgccgcgcgccagctgctccgattcggcctccgcgtgctcgtcctcgagggccgcgcccgccccggcggccgcgtctacaccactcatctcggcggggaccaggccgccgttgagctcggcggcagcgtcatcaccggcatccacaccaacccgctcggcgtgctcgccaggcagctcgggattccactccacaaggtgcgagacagttgcccgctctaccaccacgacggccgcaccgtggacatgaagctggacaggagcatggatctggtgttcaacacgcttctagaacacgccacccggctgcgagagtatctcaagaaggcagccgaggggatctcgctaggggaaggtatagagaggctgagacgcttttacaaggtggcgaaaagcgtcgaggagagggaggttctggactggcatttggctaacctggaattctccaatgccggctgcctatcggagctctcgctcgcgcactgggaccaggatgaccagtatgagatggggggagaccattgcttcctagccggagggaatgcgaggctggtacacgcattgtgcgatggtgtgccggtgttgtatgagaagacggtgaagcggattgagcatggggaggatggggtgagcatcaccgtggaaggaggccaggttttcaaggctgacatggcactctgcactgctccacttggagtgctcaagagcaggagcatcatttttgaaccggagttgccagagaggaagcttgaagcaatccagaggttggggtttgggttgttgaacaaagtcgccatggtgtttccccatgtattttgggatgaggagattgacacatttgggtgtttgaataaggagaggagcaagcgtggcgagttctttctcttctacagctaccacactgtctctggtggtgcggtacttatcgcacttgttgcgggagaagctgctttggagtttgaaaaggttgatcctgctgtagcacttcatagggtccttggtattcttaaaggtaatcactgaacttacattccaatgtatctccataagaccatatttttttgaagtcttctaacaaggatggagtatggataagctttaagtatgaagtatgaactccttgcatattagaaaatgggggaatgaattatggaatggcataacaaggtgtcacataaattaaagaaaaagaacaatgtgtcatgtgttgatttaagattagatttaaattttgctatgacaatcggatttgttgtattaattcaagtagtccctgccatatgcattggatggttgcattagaaccatcaagggtatatttggaacctagtagagtcatgccaattccataatttattggagtgccatgttgtgttgatttaacttgaagtgtttatactaataatacaagtcaacagctctgtaaaaattaactctggattgtgtacactatctgtgtactgtcttaccatctacaatcctcaactaaccagtaaattttattatagagttattaatatggattggaacttggatggtgtttgaacactgaagtgctccttttagattaagagtatacagatggaaagaaggaatggaagggaaggaaattatataatgagatattttaaagattctgttacaaatgcgatgactagtacattttttcatttactttagagtttaaataaataaagaatatgctattcttttgcactatatcatactagtttgatgtgcagtgtgcaccaatgtgcatattggaagtctattggcatagtgggggcaaataaactgtgtgatgaatatggaatggtttgcaaataatgaaacatcagacagagtgaaacatgatttggagaatgtgaattatttccattattatcttgtaatatgaatttgtggtttgtaatggaaagggtaaaaaaacaactaggagaaatgtgcttagtttccaatatctcattatataatttttttttttggttttctatttcaataaccaatgaactcacttttgtgactttttccaggtatctatggccccaaaggtgttacagtgcctgatcccattcaatcatgttgcacaagatggggtagtgatcctctttgctcaggttcatactctcacatcagagttgggtcttctggcactgactatgatattctcgctgagagcgtcaatgaccggttattctttgctggagaagcaacaaatcgtgcataccctgcaacaatgcatggagctttattgagtggactaagggaagcttccaagattctccatgcttcggaaagtagattgaattctgattataagaagtatgccctgcagaaaagcatcagacttataaataatgtactggacgaccttttcatggagccagatctagaatgtggaagattctcgttcgtgttctcctatattacacctgaggaggaacaggctccgggattggctaggattacacttgagaagcctttgcttctgccttccaagaaacgcaaagtaaagggtaatcagaaggatcaggaccctgtggctgagaagatagaccaagaggtgttttatttatacgccaccgtctcgcaagagcaagcaactgaactattggaatgcgacaatgataaaagtaggatagcagttctatgcaaagatcttggtgttaaactaatgggttacgacagtacatacgatgtatgtagtcatctgatttctagcatctcgagagctcagaaagccaggaaaaggttgcagggaccgaagagcttgaaaaccggactttgatctgtaccgctactttattcttgtttgtagaaaagaaccccatattttctcttttggtttgggccaaaaactggctcatagattgttctctagtgtgcaaactttagacgtggggcaggaaaaccaagatcctccctgccatttgtaacatggcagtcatcagtcatctggcctccctcagtagattagaacttagatgcactgataaatttcaatgaatagtttggttgcaggtactattggattcttttagggaggctactattgttttcatcttcccccttttttttctagatgttgttcctatattggtatctggcagtttatgtgttgctgaaatggtggataagctcacttctggaccagtttgtttggct</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0143400, RefSeq:Os08g0143400