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| − | {{JaponicaGene|
| + | The rice '''''Os08g0143400''''' was reported as '''''Hd18''''' in 2016 <ref name="ref1" /> by researchers from Japan. |
| − | GeneName = Os08g0143400|
| |
| − | Description = SWIRM domain containing protein|
| |
| − | Version = NM_001067511.1 GI:115474758 GeneID:4344644|
| |
| − | Length = 3740 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os08g0143400, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os08g0143400''''' '''''<=>''''' '''''Hd18''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | ===Function=== |
| − | |
| + | *Hd18 acts as an accelerator in the rice-flowering pathway under both short- and long-day conditions by elevating transcription levels of Ehd1 |
| − | Chromosome = [[:category:Japonica Chromosome 8|Chromosome 8]]|
| + | |
| − | AP = Chromosome 8:2384540..2388279|
| + | ===Phenotypic analysis=== |
| − | CDS = 2384917..2385671,2386693..2388229|
| + | *The Hayamasari Hd18 allele and knockdown of Hd18 gene expression delayed the flowering time of rice plants regardless of the day-length condition. |
| − | GCID = <gbrowseImage1>
| + | |
| − | name=NC_008401:2384540..2388279
| + | |
| − | source=RiceChromosome08
| + | You can also add sub-section(s) at will. |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage1>|
| + | ==Labs working on this gene== |
| − | GSID = <gbrowseImage2>
| + | *National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan |
| − | name=NC_008401:2384540..2388279
| + | |
| − | source=RiceChromosome08
| + | ==References== |
| − | preset=GeneLocation
| + | <references> |
| − | </gbrowseImage2>| | + | * <ref name="ref1"> |
| − | CDNA = <cdnaseq>atgtcgtcgtcgtcgcggcggccggcgaggagggcggcgttgacggcgaggtcgtcgtacgacgagtcgctggtggacgccgagctggagtcctacctcgggaacgccaggtcgcggcggatcagccggctgcgccgcctctccgccgacgagcggcagcgggagacggagacggaggcgctaatagcgctctcgctgggcttccccattgacgagctgctccccgccgagcggcccctcctgccggcccccgtcgccgccgcccccaacgactacatcgtcgtccgcaaccacatcctcgcctcgtggcgcgccgacccgcgggtgccgctcccgcgctcgcgcgtgcaggagaccgtcgccgccagctacgacaaccttgtcgccgtggcgcacgggttcctcgcccgggagggccacatcaacttcggcgtctccgccgcgttccccgcctccccaccacccgatgcgccgcagcgcctcgccgcatccgtgctcgtcgtcggcgccggtctcgccggcctcgccgccgcgcgccagctgctccgattcggcctccgcgtgctcgtcctcgagggccgcgcccgccccggcggccgcgtctacaccactcatctcggcggggaccaggccgccgttgagctcggcggcagcgtcatcaccggcatccacaccaacccgctcggcgtgctcgccaggcagctcgggattccactccacaaggtgcgagacagttgcccgctctaccaccacgacggccgcaccgtggacatgaagctggacaggagcatggatctggtgttcaacacgcttctagaacacgccacccggctgcgagagtatctcaagaaggcagccgaggggatctcgctaggggaaggtatagagaggctgagacgcttttacaaggtggcgaaaagcgtcgaggagagggaggttctggactggcatttggctaacctggaattctccaatgccggctgcctatcggagctctcgctcgcgcactgggaccaggatgaccagtatgagatggggggagaccattgcttcctagccggagggaatgcgaggctggtacacgcattgtgcgatggtgtgccggtgttgtatgagaagacggtgaagcggattgagcatggggaggatggggtgagcatcaccgtggaaggaggccaggttttcaaggctgacatggcactctgcactgctccacttggagtgctcaagagcaggagcatcatttttgaaccggagttgccagagaggaagcttgaagcaatccagaggttggggtttgggttgttgaacaaagtcgccatggtgtttccccatgtattttgggatgaggagattgacacatttgggtgtttgaataaggagaggagcaagcgtggcgagttctttctcttctacagctaccacactgtctctggtggtgcggtacttatcgcacttgttgcgggagaagctgctttggagtttgaaaaggttgatcctgctgtagcacttcatagggtccttggtattcttaaaggtatctatggccccaaaggtgttacagtgcctgatcccattcaatcatgttgcacaagatggggtagtgatcctctttgctcaggttcatactctcacatcagagttgggtcttctggcactgactatgatattctcgctgagagcgtcaatgaccggttattctttgctggagaagcaacaaatcgtgcataccctgcaacaatgcatggagctttattgagtggactaagggaagcttccaagattctccatgcttcggaaagtagattgaattctgattataagaagtatgccctgcagaaaagcatcagacttataaataatgtactggacgaccttttcatggagccagatctagaatgtggaagattctcgttcgtgttctcctatattacacctgaggaggaacaggctccgggattggctaggattacacttgagaagcctttgcttctgccttccaagaaacgcaaagtaaagggtaatcagaaggatcaggaccctgtggctgagaagatagaccaagaggtgttttatttatacgccaccgtctcgcaagagcaagcaactgaactattggaatgcgacaatgataaaagtaggatagcagttctatgcaaagatcttggtgttaaactaatgggttacgacagtacatacgatgtatgtagtcatctgatttctagcatctcgagagctcagaaagccaggaaaaggttgcagggaccgaagagcttgaaaaccggactttga</cdnaseq>|
| + | Shibaya T, Hori K, Ogiso-Tanaka E, Yamanouchi U, Shu K, Kitazawa N, Shomura A, Ando T, Ebana K, Wu J, Yamazaki T, Yano M. Hd18, Encoding Histone Acetylase Related to Arabidopsis FLOWERING LOCUS D, is Involved in the Control of Flowering Time in Rice. Plant Cell Physiol. 2016 Sep;57(9):1828-38. doi:10.1093/pcp/pcw105. Epub 2016 Jun 18. PubMed PMID: 27318280. |
| − | AA = <aaseq>MSSSSRRPARRAALTARSSYDESLVDAELESYLGNARSRRISRL RRLSADERQRETETEALIALSLGFPIDELLPAERPLLPAPVAAAPNDYIVVRNHILAS WRADPRVPLPRSRVQETVAASYDNLVAVAHGFLAREGHINFGVSAAFPASPPPDAPQR LAASVLVVGAGLAGLAAARQLLRFGLRVLVLEGRARPGGRVYTTHLGGDQAAVELGGS VITGIHTNPLGVLARQLGIPLHKVRDSCPLYHHDGRTVDMKLDRSMDLVFNTLLEHAT RLREYLKKAAEGISLGEGIERLRRFYKVAKSVEEREVLDWHLANLEFSNAGCLSELSL AHWDQDDQYEMGGDHCFLAGGNARLVHALCDGVPVLYEKTVKRIEHGEDGVSITVEGG QVFKADMALCTAPLGVLKSRSIIFEPELPERKLEAIQRLGFGLLNKVAMVFPHVFWDE EIDTFGCLNKERSKRGEFFLFYSYHTVSGGAVLIALVAGEAALEFEKVDPAVALHRVL GILKGIYGPKGVTVPDPIQSCCTRWGSDPLCSGSYSHIRVGSSGTDYDILAESVNDRL FFAGEATNRAYPATMHGALLSGLREASKILHASESRLNSDYKKYALQKSIRLINNVLD DLFMEPDLECGRFSFVFSYITPEEEQAPGLARITLEKPLLLPSKKRKVKGNQKDQDPV AEKIDQEVFYLYATVSQEQATELLECDNDKSRIAVLCKDLGVKLMGYDSTYDVCSHLI SSISRAQKARKRLQGPKSLKTGL</aaseq>|
| + | </ref> |
| − | DNA = <dnaseqindica>2609..3363#51..1587#tctcccctcgcctccgcgaagcgagagaaaccccaacctcgtcggcggcgatgtcgtcgtcgtcgcggcggccggcgaggagggcggcgttgacggcgaggtcgtcgtacgacgagtcgctggtggacgccgagctggagtcctacctcgggaacgccaggtcgcggcggatcagccggctgcgccgcctctccgccgacgagcggcagcgggagacggagacggaggcgctaatagcgctctcgctgggcttccccattgacgagctgctccccgccgagcggcccctcctgccggcccccgtcgccgccgcccccaacgactacatcgtcgtccgcaaccacatcctcgcctcgtggcgcgccgacccgcgggtgccgctcccgcgctcgcgcgtgcaggagaccgtcgccgccagctacgacaaccttgtcgccgtggcgcacgggttcctcgcccgggagggccacatcaacttcggcgtctccgccgcgttccccgcctccccaccacccgatgcgccgcagcgcctcgccgcatccgtgctcgtcgtcggcgccggtctcgccggcctcgccgccgcgcgccagctgctccgattcggcctccgcgtgctcgtcctcgagggccgcgcccgccccggcggccgcgtctacaccactcatctcggcggggaccaggccgccgttgagctcggcggcagcgtcatcaccggcatccacaccaacccgctcggcgtgctcgccaggcagctcgggattccactccacaaggtgcgagacagttgcccgctctaccaccacgacggccgcaccgtggacatgaagctggacaggagcatggatctggtgttcaacacgcttctagaacacgccacccggctgcgagagtatctcaagaaggcagccgaggggatctcgctaggggaaggtatagagaggctgagacgcttttacaaggtggcgaaaagcgtcgaggagagggaggttctggactggcatttggctaacctggaattctccaatgccggctgcctatcggagctctcgctcgcgcactgggaccaggatgaccagtatgagatggggggagaccattgcttcctagccggagggaatgcgaggctggtacacgcattgtgcgatggtgtgccggtgttgtatgagaagacggtgaagcggattgagcatggggaggatggggtgagcatcaccgtggaaggaggccaggttttcaaggctgacatggcactctgcactgctccacttggagtgctcaagagcaggagcatcatttttgaaccggagttgccagagaggaagcttgaagcaatccagaggttggggtttgggttgttgaacaaagtcgccatggtgtttccccatgtattttgggatgaggagattgacacatttgggtgtttgaataaggagaggagcaagcgtggcgagttctttctcttctacagctaccacactgtctctggtggtgcggtacttatcgcacttgttgcgggagaagctgctttggagtttgaaaaggttgatcctgctgtagcacttcatagggtccttggtattcttaaaggtaatcactgaacttacattccaatgtatctccataagaccatatttttttgaagtcttctaacaaggatggagtatggataagctttaagtatgaagtatgaactccttgcatattagaaaatgggggaatgaattatggaatggcataacaaggtgtcacataaattaaagaaaaagaacaatgtgtcatgtgttgatttaagattagatttaaattttgctatgacaatcggatttgttgtattaattcaagtagtccctgccatatgcattggatggttgcattagaaccatcaagggtatatttggaacctagtagagtcatgccaattccataatttattggagtgccatgttgtgttgatttaacttgaagtgtttatactaataatacaagtcaacagctctgtaaaaattaactctggattgtgtacactatctgtgtactgtcttaccatctacaatcctcaactaaccagtaaattttattatagagttattaatatggattggaacttggatggtgtttgaacactgaagtgctccttttagattaagagtatacagatggaaagaaggaatggaagggaaggaaattatataatgagatattttaaagattctgttacaaatgcgatgactagtacattttttcatttactttagagtttaaataaataaagaatatgctattcttttgcactatatcatactagtttgatgtgcagtgtgcaccaatgtgcatattggaagtctattggcatagtgggggcaaataaactgtgtgatgaatatggaatggtttgcaaataatgaaacatcagacagagtgaaacatgatttggagaatgtgaattatttccattattatcttgtaatatgaatttgtggtttgtaatggaaagggtaaaaaaacaactaggagaaatgtgcttagtttccaatatctcattatataatttttttttttggttttctatttcaataaccaatgaactcacttttgtgactttttccaggtatctatggccccaaaggtgttacagtgcctgatcccattcaatcatgttgcacaagatggggtagtgatcctctttgctcaggttcatactctcacatcagagttgggtcttctggcactgactatgatattctcgctgagagcgtcaatgaccggttattctttgctggagaagcaacaaatcgtgcataccctgcaacaatgcatggagctttattgagtggactaagggaagcttccaagattctccatgcttcggaaagtagattgaattctgattataagaagtatgccctgcagaaaagcatcagacttataaataatgtactggacgaccttttcatggagccagatctagaatgtggaagattctcgttcgtgttctcctatattacacctgaggaggaacaggctccgggattggctaggattacacttgagaagcctttgcttctgccttccaagaaacgcaaagtaaagggtaatcagaaggatcaggaccctgtggctgagaagatagaccaagaggtgttttatttatacgccaccgtctcgcaagagcaagcaactgaactattggaatgcgacaatgataaaagtaggatagcagttctatgcaaagatcttggtgttaaactaatgggttacgacagtacatacgatgtatgtagtcatctgatttctagcatctcgagagctcagaaagccaggaaaaggttgcagggaccgaagagcttgaaaaccggactttgatctgtaccgctactttattcttgtttgtagaaaagaaccccatattttctcttttggtttgggccaaaaactggctcatagattgttctctagtgtgcaaactttagacgtggggcaggaaaaccaagatcctccctgccatttgtaacatggcagtcatcagtcatctggcctccctcagtagattagaacttagatgcactgataaatttcaatgaatagtttggttgcaggtactattggattcttttagggaggctactattgttttcatcttcccccttttttttctagatgttgttcctatattggtatctggcagtttatgtgttgctgaaatggtggataagctcacttctggaccagtttgtttggct</dnaseqindica>|
| + | </references> |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001067511.1 RefSeq:Os08g0143400]|
| + | |
| − | }}
| + | ==Structured Information== |
| − | [[Category:Genes]] | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 8]] |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 8]]
| |
| − | [[Category:Chromosome 8]]
| |
