Os03g0262900
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These observations suggest
Contents
Annotated Information
Function
Please input function information here. Map-base cloning studies showed that glup6 was a loss-of-function mutant of guanine nucleotide exchange factor (GEF), which activates Rab GTPase, a key regulator of membrane trafficking[1].
Expression
Please input expression information here.
Evolution
Please input evolution information here.
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Labs working on this gene
- Faculty of Agriculture, Kyushu University, Fukuoka 812–8581, Japan
- National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305–8602, Japan
- Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164
- Department of General Education, Yamaguchi Prefectural University, Yamaguchi 753–8502, Japan
- Graduated School of Science, University of Tokyo, Tokyo 113–0033, Japan; and Japan Science and Technology Agency, PRESTO, Saitama 332–0012, Japan
- State Key Laboratory for Crop Genetics and Germplasm Enhancement, Jiangsu Plant Gene Engineering Research Center, Nanjing Agricultural University, Nanjing 210095, China
- National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing100081, China
- College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
References
- ↑ Masako Fukuda;Liuying Wen;Mio Satoh-Cruz;Yasushi Kawagoe;Yoshiaki Nagamura;Thomas W. Okita;Haruhiko Washida;Aya Sugino;Sonoko Ishino;Yoshizumi Ishino;Masahiro Ogawa;Mariko Sunada;Takashi Ueda;Toshihiro Kumamaru. (2013) A Guanine Nucleotide Exchange Factor for Rab5 Proteins Is Essential for Intracellular Transport of the Proglutelin from the Golgi Apparatus to the Protein Storage Vacuole in Rice Endosperm. 162(2): 663-674.
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Structured Information
Gene Name |
Os03g0262900 |
---|---|
Description |
Vacuolar sorting protein 9 domain containing protein |
Version |
NM_001056166.1 GI:115452060 GeneID:4332330 |
Length |
5299 bp |
Definition |
Oryza sativa Japonica Group Os03g0262900, complete gene. |
Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza. |
Chromosome | |
Location |
Chromosome 3:8680525..8685823 |
Sequence Coding Region |
8682799..8682951,8683334..8683513,8684480..8685262 |
Expression | |
Genome Context |
<gbrowseImage1> name=NC_008396:8680525..8685823 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1> |
Gene Structure |
<gbrowseImage2> name=NC_008396:8680525..8685823 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2> |
Coding Sequence |
<cdnaseq>atgacaaagctgttcaatcgggtatttgcttctgtcccggaagatgtgaagagtgatgaagaactttttgagaagatgtctttgttacagcagtttatacggcctgaaaacttggatatcaaaccagaatatcaaagtgaaacatcatggctgcttgcacagaaggagctgcagaagataaacatgtataaggctccaagggataagcttgcttgcatcctgaactgctgtaaagtcatcaacaacctacttctaaatgcgtctattgtatcaaatgaaaatcccccgggagctgatgaattccttccagtcctcatctatgttaccataaagcgatacagacgtcaatcacggttggtgtcagaagctcagtatttctttacaaacatcttatccgctgagtctttcatctggaacattgatggggaatcattatcaatggatgaacgagatttccaaaagaagatggacttggcaagggaacgcatgttgggattatcagctagctcagagaatcaggacaaccaaaacaatcttgatgtacgggagcaaaaatcacaaacactgaaagctagcagggattctgatgtcaatctctctttgaaagataatttccaaggtcctggactggaaatgagaagggacagtgatgcaagtagtaacccagttgagcgtgtgcaatcgatttctgatttggagaagaaaggagcagccgagcttctcaaggatgatgacttgaacaaaaaaattcaagagtacccattcctttttgcccgctctggtgatctgactgttgctgatgtagaaaaccttttaaactcctacaagcagctagtactaaagtatgtagcgctttcgcaagggatgggtatcaaccttgaaaaccctcctgttcagagcatgcaaactgtttctgatcttgtggaatctgaggagcctaaaaatgtgaagaatgcagtaaatttcagcgaaggaagcagcaaaaccagtgatgacataaaaaatgatactctttattcagaagtagacaacacgggtacccaacaaactgcggttgacccaagttatcagaaggcacagcaggatgaagcatcagatcaacctgaacatgcatga</cdnaseq> |
Protein Sequence |
<aaseq>MTKLFNRVFASVPEDVKSDEELFEKMSLLQQFIRPENLDIKPEY QSETSWLLAQKELQKINMYKAPRDKLACILNCCKVINNLLLNASIVSNENPPGADEFL PVLIYVTIKRYRRQSRLVSEAQYFFTNILSAESFIWNIDGESLSMDERDFQKKMDLAR ERMLGLSASSENQDNQNNLDVREQKSQTLKASRDSDVNLSLKDNFQGPGLEMRRDSDA SSNPVERVQSISDLEKKGAAELLKDDDLNKKIQEYPFLFARSGDLTVADVENLLNSYK QLVLKYVALSQGMGINLENPPVQSMQTVSDLVESEEPKNVKNAVNFSEGSSKTSDDIK NDTLYSEVDNTGTQQTAVDPSYQKAQQDEASDQPEHA</aaseq> |
Gene Sequence |
<dnaseqindica>2275..2427#2810..2989#3956..4738#cgcggcgacccttgacttcctcccccttctctcctcctcccacaaaacgtgaccgaatccggctgatccgagcccgccgacctccccggcttccccgatccggcgacgatggatggcggcggcggaggcgacgccttcgggtccgcgaccgcgccgctggcctggcacgacttcctggagcgcatgcgccagccctccgccgccgacttcgtcaagtccatcaaggggttagctccgccacaaattttcggtgctaggcatatgctcgatctcagttcgtggtctagggatccgagacggaaagcgtgtgccgcgattggttcgtgttacgcggcgcgtgttggttcgatagtgtgtggtgcggggatgggcgattttgctggtatagtggggatttggggagcatttggcgtgggttcaaggggattacgttcccgtgtccttcaatatgtgttagcaaggcgatatgaccgatcgccgtgccggttttgtggggggagcttaatctagggttgctgtttgtctcttcgcctacctgttaaccgtcgtctgtgtagttccgaggtgaagtttaatgccattcctattttctatgtctagggttactgcatttggatagatgagtcgcagcacaatcgatataattgatcagtgtgccggcaatgcaacaatgcgatgtgtgtgggggttgtttgaggaaaattgcatgatcggtttatgcactttgggtgaaatatctaccttggatacagagcatagaagttaacatgcttatttagaaatacatgagttgggatttatgcacagtggcaatgacacatagtagccaaggttgtatctggagattcaacagctgggaggacaccatagttaattcttgacaaatacgcttttctatatgttaggccagaagctgggaatttggaattaaggctttgtaaactagtgagtttacttaattcttctacatgtaggagcacgcttcagcactgccttctttgcctttctttttttaccttttaaaatactagatccagcatccataactaaccaatacttgacatttatgtatgttttcgtatgggaaatacatcatttatgttgttatgtttcatgttatacagctttatcgtaacgttctcgaacagagctcctgaccctgaacatgatagtgcggctgttcaagaattcctggaaaatatggaaggtgctttcagggctcacaccccctgggctggaagttctgaagaagaactagaaagtgccggtgaggtaatcaatttccttgttccgtggtactgctgatatagtaatattacataactagagagatgaacatcaaaattgaatttcagagctctatgttcttgttgattacctgcttgcaaagtaagtcgttaaatttggtttgtccaaatgtcttatgggtaatttccgtatgaactttctatagataagatatgcctgtgttctttttatttttggatttttaattgatgtcactgtgctatatgagtatatgattcttgattcgtggaccatgctgtctttcctttttgacatgatcggattaatgcattgactaaaatctgttagacaacgggatgaactaaacatcctattttggttctactttaacatgagatgaattatttctgtctttcattttccagttatcctattttctggtgaccatgcctgcttgccaaagattcaggcagtcaatccatcatgttatcataatctctgtgtttaacagagatacataataaatgcatctgacttgtatttactcccatcggaaatttggaatgcacggcttcatcaaattatctcaggcattttgattaagaatgtgttggagtactaggaaggaacttagcatccattattgatagagaagaaaatggtgagaaaacctgcgttagaagggattcgaactcaggctggtgctctgctcctggcagctccctgccagccgagctaggtgcctttcttagacactttgattaagactggcagttacgtggaattattaacttattccactagtcatgttgctgtttttaaagtgcagttcaaactcgatacttttaaacttaaactctcctttttcactctcgctctaccctttacctaccgagttcctcttcatcttattgatatattccataaaatgtcataacgttacttgcatattctccaatatatttgtcgttatatcaacatttggattgtcttgtattgtgattttagggccttgagaaatacgttatgacaaagctgttcaatcgggtatttgcttctgtcccggaagatgtgaagagtgatgaagaactttttgagaagatgtctttgttacagcagtttatacggcctgaaaacttggatatcaaaccagaatatcaaagtgaaacatcatggctggtatggaagttgatttcctctctttatacatttttagatttgtgaagatctgttacagtgcagaacctttcaataacattgaactacttgggtattgaggaacctgttgaacctgtctgtctgaagtatatttataaactaatgcttacatgtgaataacattctgcccacttcttatatacactcgctatttagtttatggcattatcatcacagtaatgctgccactgtcaaccctaatctgcgtactgtggtctaatgtcaattctttttgcttgcaaggaccttaattaagggaatacttccagtggcatgcattaactggctcagtgttcaaatatataaatgttctttactaacatatgttcccttctttgtacagcttgcacagaaggagctgcagaagataaacatgtataaggctccaagggataagcttgcttgcatcctgaactgctgtaaagtcatcaacaacctacttctaaatgcgtctattgtatcaaatgaaaatcccccgggagctgatgaattccttccagtcctcatctatgttaccataaaggtatgattcactacttgttaaagtactggttgatgatacaaatgaaccatcaaatattgacaatattatattaagttgttggtgctgtattggagaaagaaaatttgccccctttgatatggcacagattaggtgtcgacttgatggtgactatttgtgtattacctactcaactttgatattttctagaaaaaatataagcctattattggtgcagtggtacgtgatttgttgggcacattgcctcttaatagagttgtcagtgcgctgtgcaacctcatttactgttgcttcgtattacttttagttccaacttctacctatctattatgatgcaggttccatgtctaatctaatagtgagttttgtactgaaatagtttgccagatttgagagcaaccttgtcatgcactcatgcccatcagtacatgtgcttagagcaaccatgaatctgtgaaccatcagttgggcatccctcctctagctaggcactacatcagttttgattacaaatgatggttaaactttcattacaaacctaatagttggcatttgagtggttgtggacttgcttttgaaaactgcagcaaatgaccataaagggcttaagatcagatcatgtacggttatcactttacttttctcttcattaccggaaagagcttgtcaactactgaatggtaagagttaatgatatatgtgctcttctagtttggcctctcaaggtattacgtgcttctggaattactgcagttagcctaaactacccttgcaccgcaattcagcattagttgtagttttgttctatcatctgaactacaatgttatgatccttttgcctgaaaatcatctgtaaagtgtttttatttgtcatttaaattaaggtagccaaaagaatttaagcagtagctgttcttaatgcaggcaaatcctccacagttacactcaaatctattatatatacagcgatacagacgtcaatcacggttggtgtcagaagctcagtatttctttacaaacatcttatccgctgagtctttcatctggaacattgatggggaatcattatcaatggatgaacgagatttccaaaagaagatggacttggcaagggaacgcatgttgggattatcagctagctcagagaatcaggacaaccaaaacaatcttgatgtacgggagcaaaaatcacaaacactgaaagctagcagggattctgatgtcaatctctctttgaaagataatttccaaggtcctggactggaaatgagaagggacagtgatgcaagtagtaacccagttgagcgtgtgcaatcgatttctgatttggagaagaaaggagcagccgagcttctcaaggatgatgacttgaacaaaaaaattcaagagtacccattcctttttgcccgctctggtgatctgactgttgctgatgtagaaaaccttttaaactcctacaagcagctagtactaaagtatgtagcgctttcgcaagggatgggtatcaaccttgaaaaccctcctgttcagagcatgcaaactgtttctgatcttgtggaatctgaggagcctaaaaatgtgaagaatgcagtaaatttcagcgaaggaagcagcaaaaccagtgatgacataaaaaatgatactctttattcagaagtagacaacacgggtacccaacaaactgcggttgacccaagttatcagaaggcacagcaggatgaagcatcagatcaacctgaacatgcatgagttgttggtcaagtatggttggccgtcgaaatacagggaaaacgttgtcaacggcgggtcattctcttatatatcaaggggtgacaactggttacagagaagtgggtgcattgctgtgctcctgaagccacaaaatgtaaatgctggaaactagaatatagagattcaagtccctggaaactagaatatagagattctcttatatcagcgtcgaggaagatcaagattcattctgctgaagcaaagctccttgtcccgacgttcgttcattgatcctttggttatggactcttcaagtttgattttgcggttaataccattttggtaaaccattttacttttgtagttcaaattaaaatatccatatgtgaaattagatccaagagaaaatggcatgaaacataatttgatcgtcttctagttgttgtctttagctgctagtactagtgcataccgatgttcgtcttctacagattagttatcaccggtgttttgagcacctcaacttcatttgtttggtttaaatggacataatttcagggaactattccttccctgtcg</dnaseqindica> 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