Difference between revisions of "Os03g0262900"
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==References== | ==References== | ||
<references> | <references> | ||
| − | <ref name="ref1"> Masako Fukuda;Liuying Wen;Mio Satoh-Cruz;Yasushi Kawagoe;Yoshiaki Nagamura;Thomas W. Okita;Haruhiko Washida;Aya Sugino;Sonoko Ishino;Yoshizumi Ishino;Masahiro Ogawa;Mariko Sunada;Takashi Ueda;Toshihiro Kumamaru. (2013) A Guanine Nucleotide Exchange Factor for Rab5 Proteins Is Essential for Intracellular Transport of the Proglutelin from the Golgi Apparatus to the Protein Storage Vacuole in Rice Endosperm. 162(2): 663-674.</ref> | + | <ref name="ref1"> Ueda Y, Satoh-Cruz M, Matsusaka H, Takemoto-Kuno Y, Fukuda M, Okita TW, Ogawa M, Satoh H, Kumamaru T (2010) Gene-gene interactions between mutants that accumulate abnormally high amounts of proglutelin in rice seed. Breed Sci 60: 568–574</ref> |
| − | <ref name=" | + | <ref name="ref2"> Masako Fukuda;Liuying Wen;Mio Satoh-Cruz;Yasushi Kawagoe;Yoshiaki Nagamura;Thomas W. Okita;Haruhiko Washida;Aya Sugino;Sonoko Ishino;Yoshizumi Ishino;Masahiro Ogawa;Mariko Sunada;Takashi Ueda;Toshihiro Kumamaru. (2013) A Guanine Nucleotide Exchange Factor for Rab5 Proteins Is Essential for Intracellular Transport of the Proglutelin from the Golgi Apparatus to the Protein Storage Vacuole in Rice Endosperm. 162(2): 663-674.</ref> |
| + | <ref name="ref3">Feng Liu;Yulong Ren;Yihua Wang;Cheng Peng;Kunneng Zhou;Jia Lv;Xiuping Guo;Xin Zhang;Mingsheng Zhong;Shaolu Zhao;Ling Jiang;Haiyang Wang;Yiqun Bao;Jianmin Wan. (2013) OsVPS9A Functions Cooperatively with OsRAB5A to Regulate Post-Golgi Dense Vesicle-Mediated Storage Protein Trafficking to the Protein Storage Vacuole in Rice Endosperm Cells. Molecular Plant ，6(6)：1918-1932</ref> | ||
</references> | </references> | ||
Revision as of 08:32, 15 May 2014
The rice glup6 plays a crucial role in the same pathway responsible for the intracellular transport of proglutelins from the Golgi to the protein storage vacuoles(PSVs) as glup4[1].
Contents
Annotated Information
Function
Map-base cloning studies showed that glup6 was a loss-of-function mutant of guanine nucleotide exchange factor (GEF), which activates Rab GTPase, a key regulator of membrane trafficking[1].
Expression
Please input expression information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
- Faculty of Agriculture, Kyushu University, Fukuoka 812–8581, Japan
- National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305–8602, Japan
- Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164
- Department of General Education, Yamaguchi Prefectural University, Yamaguchi 753–8502, Japan
- Graduated School of Science, University of Tokyo, Tokyo 113–0033, Japan; and Japan Science and Technology Agency, PRESTO, Saitama 332–0012, Japan
- State Key Laboratory for Crop Genetics and Germplasm Enhancement, Jiangsu Plant Gene Engineering Research Center, Nanjing Agricultural University, Nanjing 210095, China
- National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing100081, China
- College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
References
Cite error: <ref> tag with name "ref2" defined in <references> is not used in prior text.
Cite error: <ref> tag with name "ref3" defined in <references> is not used in prior text.
Structured Information
| Gene Name |
Os03g0262900 |
|---|---|
| Description |
Vacuolar sorting protein 9 domain containing protein |
| Version |
NM_001056166.1 GI:115452060 GeneID:4332330 |
| Length |
5299 bp |
| Definition |
Oryza sativa Japonica Group Os03g0262900, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 3:8680525..8685823 |
| Sequence Coding Region |
8682799..8682951,8683334..8683513,8684480..8685262 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008396:8680525..8685823 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008396:8680525..8685823 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgacaaagctgttcaatcgggtatttgcttctgtcccggaagatgtgaagagtgatgaagaactttttgagaagatgtctttgttacagcagtttatacggcctgaaaacttggatatcaaaccagaatatcaaagtgaaacatcatggctgcttgcacagaaggagctgcagaagataaacatgtataaggctccaagggataagcttgcttgcatcctgaactgctgtaaagtcatcaacaacctacttctaaatgcgtctattgtatcaaatgaaaatcccccgggagctgatgaattccttccagtcctcatctatgttaccataaagcgatacagacgtcaatcacggttggtgtcagaagctcagtatttctttacaaacatcttatccgctgagtctttcatctggaacattgatggggaatcattatcaatggatgaacgagatttccaaaagaagatggacttggcaagggaacgcatgttgggattatcagctagctcagagaatcaggacaaccaaaacaatcttgatgtacgggagcaaaaatcacaaacactgaaagctagcagggattctgatgtcaatctctctttgaaagataatttccaaggtcctggactggaaatgagaagggacagtgatgcaagtagtaacccagttgagcgtgtgcaatcgatttctgatttggagaagaaaggagcagccgagcttctcaaggatgatgacttgaacaaaaaaattcaagagtacccattcctttttgcccgctctggtgatctgactgttgctgatgtagaaaaccttttaaactcctacaagcagctagtactaaagtatgtagcgctttcgcaagggatgggtatcaaccttgaaaaccctcctgttcagagcatgcaaactgtttctgatcttgtggaatctgaggagcctaaaaatgtgaagaatgcagtaaatttcagcgaaggaagcagcaaaaccagtgatgacataaaaaatgatactctttattcagaagtagacaacacgggtacccaacaaactgcggttgacccaagttatcagaaggcacagcaggatgaagcatcagatcaacctgaacatgcatga</cdnaseq> |
| Protein Sequence |
<aaseq>MTKLFNRVFASVPEDVKSDEELFEKMSLLQQFIRPENLDIKPEY QSETSWLLAQKELQKINMYKAPRDKLACILNCCKVINNLLLNASIVSNENPPGADEFL PVLIYVTIKRYRRQSRLVSEAQYFFTNILSAESFIWNIDGESLSMDERDFQKKMDLAR ERMLGLSASSENQDNQNNLDVREQKSQTLKASRDSDVNLSLKDNFQGPGLEMRRDSDA SSNPVERVQSISDLEKKGAAELLKDDDLNKKIQEYPFLFARSGDLTVADVENLLNSYK QLVLKYVALSQGMGINLENPPVQSMQTVSDLVESEEPKNVKNAVNFSEGSSKTSDDIK NDTLYSEVDNTGTQQTAVDPSYQKAQQDEASDQPEHA</aaseq> |
| Gene Sequence |
<dnaseqindica>2275..2427#2810..2989#3956..4738#cgcggcgacccttgacttcctcccccttctctcctcctcccacaaaacgtgaccgaatccggctgatccgagcccgccgacctccccggcttccccgatccggcgacgatggatggcggcggcggaggcgacgccttcgggtccgcgaccgcgccgctggcctggcacgacttcctggagcgcatgcgccagccctccgccgccgacttcgtcaagtccatcaaggggttagctccgccacaaattttcggtgctaggcatatgctcgatctcagttcgtggtctagggatccgagacggaaagcgtgtgccgcgattggttcgtgttacgcggcgcgtgttggttcgatagtgtgtggtgcggggatgggcgattttgctggtatagtggggatttggggagcatttggcgtgggttcaaggggattacgttcccgtgtccttcaatatgtgttagcaaggcgatatgaccgatcgccgtgccggttttgtggggggagcttaatctagggttgctgtttgtctcttcgcctacctgttaaccgtcgtctgtgtagttccgaggtgaagtttaatgccattcctattttctatgtctagggttactgcatttggatagatgagtcgcagcacaatcgatataattgatcagtgtgccggcaatgcaacaatgcgatgtgtgtgggggttgtttgaggaaaattgcatgatcggtttatgcactttgggtgaaatatctaccttggatacagagcatagaagttaacatgcttatttagaaatacatgagttgggatttatgcacagtggcaatgacacatagtagccaaggttgtatctggagattcaacagctgggaggacaccatagttaattcttgacaaatacgcttttctatatgttaggccagaagctgggaatttggaattaaggctttgtaaactagtgagtttacttaattcttctacatgtaggagcacgcttcagcactgccttctttgcctttctttttttaccttttaaaatactagatccagcatccataactaaccaatacttgacatttatgtatgttttcgtatgggaaatacatcatttatgttgttatgtttcatgttatacagctttatcgtaacgttctcgaacagagctcctgaccctgaacatgatagtgcggctgttcaagaattcctggaaaatatggaaggtgctttcagggctcacaccccctgggctggaagttctgaagaagaactagaaagtgccggtgaggtaatcaatttccttgttccgtggtactgctgatatagtaatattacataactagagagatgaacatcaaaattgaatttcagagctctatgttcttgttgattacctgcttgcaaagtaagtcgttaaatttggtttgtccaaatgtcttatgggtaatttccgtatgaactttctatagataagatatgcctgtgttctttttatttttggatttttaattgatgtcactgtgctatatgagtatatgattcttgattcgtggaccatgctgtctttcctttttgacatgatcggattaatgcattgactaaaatctgttagacaacgggatgaactaaacatcctattttggttctactttaacatgagatgaattatttctgtctttcattttccagttatcctattttctggtgaccatgcctgcttgccaaagattcaggcagtcaatccatcatgttatcataatctctgtgtttaacagagatacataataaatgcatctgacttgtatttactcccatcggaaatttggaatgcacggcttcatcaaattatctcaggcattttgattaagaatgtgttggagtactaggaaggaacttagcatccattattgatagagaagaaaatggtgagaaaacctgcgttagaagggattcgaactcaggctggtgctctgctcctggcagctccctgccagccgagctaggtgcctttcttagacactttgattaagactggcagttacgtggaattattaacttattccactagtcatgttgctgtttttaaagtgcagttcaaactcgatacttttaaacttaaactctcctttttcactctcgctctaccctttacctaccgagttcctcttcatcttattgatatattccataaaatgtcataacgttacttgcatattctccaatatatttgtcgttatatcaacatttggattgtcttgtattgtgattttagggccttgagaaatacgttatgacaaagctgttcaatcgggtatttgcttctgtcccggaagatgtgaagagtgatgaagaactttttgagaagatgtctttgttacagcagtttatacggcctgaaaacttggatatcaaaccagaatatcaaagtgaaacatcatggctggtatggaagttgatttcctctctttatacatttttagatttgtgaagatctgttacagtgcagaacctttcaataacattgaactacttgggtattgaggaacctgttgaacctgtctgtctgaagtatatttataaactaatgcttacatgtgaataacattctgcccacttcttatatacactcgctatttagtttatggcattatcatcacagtaatgctgccactgtcaaccctaatctgcgtactgtggtctaatgtcaattctttttgcttgcaaggaccttaattaagggaatacttccagtggcatgcattaactggctcagtgttcaaatatataaatgttctttactaacatatgttcccttctttgtacagcttgcacagaaggagctgcagaagataaacatgtataaggctccaagggataagcttgcttgcatcctgaactgctgtaaagtcatcaacaacctacttctaaatgcgtctattgtatcaaatgaaaatcccccgggagctgatgaattccttccagtcctcatctatgttaccataaaggtatgattcactacttgttaaagtactggttgatgatacaaatgaaccatcaaatattgacaatattatattaagttgttggtgctgtattggagaaagaaaatttgccccctttgatatggcacagattaggtgtcgacttgatggtgactatttgtgtattacctactcaactttgatattttctagaaaaaatataagcctattattggtgcagtggtacgtgatttgttgggcacattgcctcttaatagagttgtcagtgcgctgtgcaacctcatttactgttgcttcgtattacttttagttccaacttctacctatctattatgatgcaggttccatgtctaatctaatagtgagttttgtactgaaatagtttgccagatttgagagcaaccttgtcatgcactcatgcccatcagtacatgtgcttagagcaaccatgaatctgtgaaccatcagttgggcatccctcctctagctaggcactacatcagttttgattacaaatgatggttaaactttcattacaaacctaatagttggcatttgagtggttgtggacttgcttttgaaaactgcagcaaatgaccataaagggcttaagatcagatcatgtacggttatcactttacttttctcttcattaccggaaagagcttgtcaactactgaatggtaagagttaatgatatatgtgctcttctagtttggcctctcaaggtattacgtgcttctggaattactgcagttagcctaaactacccttgcaccgcaattcagcattagttgtagttttgttctatcatctgaactacaatgttatgatccttttgcctgaaaatcatctgtaaagtgtttttatttgtcatttaaattaaggtagccaaaagaatttaagcagtagctgttcttaatgcaggcaaatcctccacagttacactcaaatctattatatatacagcgatacagacgtcaatcacggttggtgtcagaagctcagtatttctttacaaacatcttatccgctgagtctttcatctggaacattgatggggaatcattatcaatggatgaacgagatttccaaaagaagatggacttggcaagggaacgcatgttgggattatcagctagctcagagaatcaggacaaccaaaacaatcttgatgtacgggagcaaaaatcacaaacactgaaagctagcagggattctgatgtcaatctctctttgaaagataatttccaaggtcctggactggaaatgagaagggacagtgatgcaagtagtaacccagttgagcgtgtgcaatcgatttctgatttggagaagaaaggagcagccgagcttctcaaggatgatgacttgaacaaaaaaattcaagagtacccattcctttttgcccgctctggtgatctgactgttgctgatgtagaaaaccttttaaactcctacaagcagctagtactaaagtatgtagcgctttcgcaagggatgggtatcaaccttgaaaaccctcctgttcagagcatgcaaactgtttctgatcttgtggaatctgaggagcctaaaaatgtgaagaatgcagtaaatttcagcgaaggaagcagcaaaaccagtgatgacataaaaaatgatactctttattcagaagtagacaacacgggtacccaacaaactgcggttgacccaagttatcagaaggcacagcaggatgaagcatcagatcaacctgaacatgcatgagttgttggtcaagtatggttggccgtcgaaatacagggaaaacgttgtcaacggcgggtcattctcttatatatcaaggggtgacaactggttacagagaagtgggtgcattgctgtgctcctgaagccacaaaatgtaaatgctggaaactagaatatagagattcaagtccctggaaactagaatatagagattctcttatatcagcgtcgaggaagatcaagattcattctgctgaagcaaagctccttgtcccgacgttcgttcattgatcctttggttatggactcttcaagtttgattttgcggttaataccattttggtaaaccattttacttttgtagttcaaattaaaatatccatatgtgaaattagatccaagagaaaatggcatgaaacataatttgatcgtcttctagttgttgtctttagctgctagtactagtgcataccgatgttcgtcttctacagattagttatcaccggtgttttgagcacctcaacttcatttgtttggtttaaatggacataatttcagggaactattccttccctgtcg</dnaseqindica> 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