Difference between revisions of "Main Page"

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*Genes to be curated: [[RiceWiki:TBC|a list of genes to be curated]]
 
*Genes to be curated: [[RiceWiki:TBC|a list of genes to be curated]]
 
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*Curated genes: More than [[RiceWiki:Curated Genes| '''500 Rice Genes''']] have been curated.
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*Curated genes: over [[RiceWiki:Curated Genes| '''500 rice genes''']]
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*'''[[Omics Knowledge Portal for Rice]]''': Sharing and Integrating the precious omics knowledge for rice.
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*'''[[Omics knowledge]]''': an omics knowledge portal for rice.
 
*Contribution score: [[Special:AuthorReward |quantified contributions]] by [http://www.ncbi.nlm.nih.gov/pubmed/23732274 ''AuthorReward'']
 
*Contribution score: [[Special:AuthorReward |quantified contributions]] by [http://www.ncbi.nlm.nih.gov/pubmed/23732274 ''AuthorReward'']
 
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<!--------------main part one---------------->
 
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<!-----------Rice Genome Overview------------>
 
<!-----------Rice Genome Overview------------>
 
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<div style="background:#deffde; border-bottom:1px solid #93ff93; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Omics Knowledge Portal for Rice (OKP4R)</div>
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<div style="background:#deffde; border-bottom:1px solid #93ff93; padding:0.2em 0.5em; font-size:120%; font-weight:bold;">Omics Knowledge Portal for Rice (OKP4R)</div>
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* '''RiceWiki-OKP4R''' is aimed at providing users a multidisciplinary repository to share comprehensive curation of published omics knowledge for rice. [[Omics_Knowledge_Portal_for_Rice|'''(More...)''']]<br>
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* '''OKP4R''' is aimed to provide a multidisciplinary repository to share omics knowledge for rice. [[Omics_Knowledge_Portal_for_Rice|'''(More...)''']]<br>
 
[[File:IC4R_Omics_Pic_Jian.png|right|505px|'''Figure 1. Omics Knowledge Portal for Rice''']]
 
[[File:IC4R_Omics_Pic_Jian.png|right|505px|'''Figure 1. Omics Knowledge Portal for Rice''']]
 
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<div style="background:#deffde; border-bottom:1px solid #93ff93; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Rice Story</div>
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<div style="background:#deffde; border-bottom:1px solid #93ff93; padding:0.2em 0.5em; font-size:120%; font-weight:bold;">Rice Story</div>
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*As an important food
 
*As an important food
 
:Rice is the seed of the monocot plants ''Oryza sativa'' (Asian rice) or ''Oryza glaberrima'' (African rice). As a cereal grain, it is the most important staple food for a large part of the world's human population, especially in East Asia, Southeast Asia, South Asia, the Middle East, and the West Indies. It is the grain with the third-highest worldwide production, after maize (corn) and wheat, according to data for 2010 [http://en.wikipedia.org/wiki/Rice (Full article...)].<br>
 
:Rice is the seed of the monocot plants ''Oryza sativa'' (Asian rice) or ''Oryza glaberrima'' (African rice). As a cereal grain, it is the most important staple food for a large part of the world's human population, especially in East Asia, Southeast Asia, South Asia, the Middle East, and the West Indies. It is the grain with the third-highest worldwide production, after maize (corn) and wheat, according to data for 2010 [http://en.wikipedia.org/wiki/Rice (Full article...)].<br>
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<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;"> Latest News </div>
 
<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;"> Latest News </div>
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* '''Jun 29th, 2016''': The Upcoming Conference Note: [http://pgc.hzau.edu.cn/ '''The 17th Conference of Plant Genomics in China will be held in Fuzhou China from August 19th to 22th''']
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* '''Jun 29th, 2016''': The Upcoming Conference Note: [http://pgc.hzau.edu.cn/ The 17th Conference of Plant Genomics] in China will be held in Fuzhou China from August 19th to 22th
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* '''Jun 25th, 2016''': [[Omics Knowledge Portal for Rice| '''The Omics Knowledge Portal for Rice was launched at RiceWiki. Welcome to join us and have fun!''' ]]  
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* '''Jun 25th, 2016''': [[Omics Knowledge Portal for Rice| The Omics Knowledge Portal for Rice was launched at RiceWiki. ]]
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* '''Jun 21th, 2016''': [http://www.big.ac.cn/xwzx/xshd/201606/t20160621_4624539.html '''Seminar Note: Dr.Haixu from Indiana University will give a lecture  on 《Computational methods for characterizing spontaneous mutations in bacterial genomes using whole genome shotgun sequencing》''']
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* '''Jun 21th, 2016''': Seminar: Dr. Haixu Tang from Indiana University will give a lecture  on [http://www.big.ac.cn/xwzx/xshd/201606/t20160621_4624539.html "Computational methods for characterizing spontaneous mutations in bacterial genomes using whole genome shotgun sequencing"]
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* '''Apr 19th, 2016''': [http://bigd.big.ac.cn/news/5 Dr. Zhang Zhang presented a talk at the 9th International Biocuration Conference.]
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* '''Apr 19th, 2016''': Dr. Zhang Zhang presented a talk at [http://bigd.big.ac.cn/news/5 the 9th International Biocuration Conference].
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* '''Mar 11th, 2016''': [http://bigd.big.ac.cn/news/2 '''A delegation from EMBL-EBI visited BIG Data Center''']
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* '''Jan 31th, 2016''': The staffs of BIG Data Center presented a keynote lecture at [http://www.cbrc.kaust.edu.sa/cbrcweb/sp/bd2016.php the KAUST Research Conference in Saudi Arabia].  
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* '''Jan 31th, 2016''': [http://www.cbrc.kaust.edu.sa/cbrcweb/sp/bd2016.php The staffs of BIG Data Center  presented a keynote lecture at the KAUST Research Conference in Saudi Arabia.]
 
 
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'''Primary publication:'''<br>
 
'''Primary publication:'''<br>
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*'''RiceWiki: a wiki-based database for community curation of rice genes.''' ''Nucleic Acids Research'' (2014), 42(Database issue):D1222-1228. [http://www.ncbi.nlm.nih.gov/pubmed/24136999 '''PMID=24136999''']
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*'''RiceWiki: a wiki-based database for community curation of rice genes.''' ''Nucleic Acids Research'' (2014), 42(Database issue):D1222-1228. [http://www.ncbi.nlm.nih.gov/pubmed/24136999 PMID=24136999]
 
'''Related publications:'''
 
'''Related publications:'''
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*'''Information Commons for Rice (IC4R).''' ''Nucleic Acids Research'' (2016), 44(D1):D1172-1180. [http://www.ncbi.nlm.nih.gov/pubmed/26519466 '''PMID=26519466''']
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*'''Information Commons for Rice (IC4R).''' ''Nucleic Acids Research'' (2016), 44(D1):D1172-1180. [http://www.ncbi.nlm.nih.gov/pubmed/26519466 PMID=26519466]
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*'''Bringing biocuration to China.''' ''Genomics Proteomics Bioinformatics'' (2014), 12(4):153-155.[http://www.ncbi.nlm.nih.gov/pubmed/25042682 '''PMID=25042682''']
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*'''Bringing biocuration to China.''' ''Genomics Proteomics Bioinformatics'' (2014), 12(4):153-155.[http://www.ncbi.nlm.nih.gov/pubmed/25042682 PMID=25042682]
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*'''AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification.''' ''Bioinformatics'' (2013), 29(14):1837-1839.[http://www.ncbi.nlm.nih.gov/pubmed/23732274 '''PMID=23732274''']]
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*'''AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification.''' ''Bioinformatics'' (2013), 29(14):1837-1839.[http://www.ncbi.nlm.nih.gov/pubmed/23732274 PMID=23732274]]
 
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Revision as of 21:34, 29 June 2016

__NOTITLE__


Welcome to RiceWiki
86,216 rice genes inside
Contribute your efforts, further our knowledge.
Introduction
RiceWiki, a project of IC4R (Information Commmons for Rice) as well as a component of ScienceWikis, is a wiki-based, publicly editable and open-content platform for community curation of genes and Omics Knowledge in rice, viz., a community-curated resource of rice knowledge. Unlike conventional biological databases based on expert curation, RiceWiki harnesses collective intelligence to collect, edit and annotate information about rice, quantifies users' contributions in each annotated gene and provides explicit authorship for each contributor to encourage more participation from the whole scientific community. Welcome to join us !
Nothing great is ever accomplished in isolation. – Yo-Yo Ma
  • Literature: 35717 rice-related publications associated with rice genes
  • Transcriptome: gene expression profiles at 22 developmental stages and tissue types based on RNA-Seq
  • Variations: SNPs and INDELs (under collection)
Omics Knowledge Portal for Rice (OKP4R)
  • OKP4R is aimed to provide a multidisciplinary repository to share omics knowledge for rice. (More...)
Figure 1. Omics Knowledge Portal for Rice
Rice Story
  • As an important food
Rice is the seed of the monocot plants Oryza sativa (Asian rice) or Oryza glaberrima (African rice). As a cereal grain, it is the most important staple food for a large part of the world's human population, especially in East Asia, Southeast Asia, South Asia, the Middle East, and the West Indies. It is the grain with the third-highest worldwide production, after maize (corn) and wheat, according to data for 2010 (Full article...).
  • As a biological model
Rice is also a model organism for the biological study of the grass family of crops and other plants. The two most common rice cultivars, indica and japonica, were completely sequenced in 2002. The genome sequences of domesticated rice provide a solid foundation for integrating biological information, including genetics, gene expression, development, physiology and evolution.
Featured Research

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Latest News
Publications

Primary publication:

  • RiceWiki: a wiki-based database for community curation of rice genes. Nucleic Acids Research (2014), 42(Database issue):D1222-1228. PMID=24136999

Related publications:

  • Information Commons for Rice (IC4R). Nucleic Acids Research (2016), 44(D1):D1172-1180. PMID=26519466
  • Bringing biocuration to China. Genomics Proteomics Bioinformatics (2014), 12(4):153-155.PMID=25042682
  • AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification. Bioinformatics (2013), 29(14):1837-1839.PMID=23732274]
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