RiceWiki:TBC
To be curated
Every Gene Has A Story !
Gene name | RAP ID | MSU ID | Reference Title |
---|---|---|---|
OsSOS1 | Os12g0641100 | LOC_Os12g44360 | Huan Wang;Meishan Zhang;Rui Guo;Decheng Shi;Bao Liu;Xiuyun Lin;Chunwu Yan Effects of salt stress on ion balance and nitrogen metabolism of old and young leaves in rice (Oryza sativa L.)BMC Plant Biology, 2012, 12: 194 |
OsCCD1 | Os12g0640600 | LOC_Os12g44310 | Andrea Ilg;Qiuju Yu;Patrick Schaub;Peter Beyer;Salim Al-Babili Overexpression of the rice carotenoid cleavage dioxygenase 1 gene in Golden Rice endosperm suggests apocarotenoids as substrates in planta Planta, 2010, 232(3): 691-699 |
OsPTR2 | Os12g0638200 | LOC_Os12g44100 | Yuge Li;Jie Ouyang;Ya-Yun Wang;Rui Hu;Kuaifei Xia;Jun Duan;Yaqin Wang;Yi-Fang Tsay;Mingyong Zhang Disruption of the rice nitrate transporter OsNPF2.2 hinders root-to-shoot nitrate transport and vascular development Scientific Reports, 2015, 5: 9635 |
Osgr-rbp4 | Os12g0632000 | LOC_Os12g43600 | Chandan Sahi;Manu Agarwal;Amanjot Singha;Anil Grover Molecular characterization of a novel isoform of rice (Oryza sativa L.) glycine rich-RNA binding protein and evidence for its involvement in high temperature stress response Plant Science, 2007, 173(2): 144-155 |
TOND1 | Os12g0630100 | LOC_Os12g43440 | Yangjun Zhang;Lubin Tan;Zuofeng Zhu;Lixing Yuan;Daoxin Xie;Chuanqing Sun TOND1 confers tolerance to nitrogen deficiency in rice The Plant Journal, 2014, |
OsSpo11-4 | Os12g0622500 | LOC_Os12g42760 | Yoshinori Shingu;Takeshi Tokai;Yasuo Agawa;Kentaro Toyota;Selina Ahamed;Makiko Kawagishi-Kobayashi;Akira Komatsu;Tsutomu Mikawa;Masa-Toshi Yamamoto;Kyo Wakasa;Takehiko Shibata;Kohji Kusano The double-stranded break-forming activity of plant SPO11s and a novel rice SPO11 revealed by a Drosophila bioassay BMC Microbiology, 2012, 13: 1 |
OsYABBY6 | Os12g0621100 | LOC_Os12g42610 | Taiyo Toriba;Kohsuke Harada;Atsushi Takamura;Hidemitsu Nakamura;Hiroaki Ichikawa;Takuya Suzaki;Hiro-Yuki Hirano Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1 Molecular Genetics and Genomics, 2007, 277(5): 457-468 |
OsHAP2F | Os12g0618600 | LOC_Os12g42400 | Thiruvengadam Thirumurugan;Yukihiro Ito;Takahiko Kubo;Akiko Serizawa;Nori Kurata Identification, characterization and interaction of HAP family genes in rice Molecular Genetics and Genomics, 2008, 279(3): 279-289 |
OsPPKL3 | Os12g0617900 | LOC_Os12g42310 | Xiaojun Zhang;Jianfei Wang;Ji Huang;Hongxia Lan;Cailin Wang;Congfei Yin;Yunyu Wu;Haijuan Tang;Qian Qian;Jiayang Li;Hongsheng Zhang Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice Proceedings of the National Academy of Sciences, 2012, 109(52): 21534-21539 |
OsNCED5 | Os12g0617400 | LOC_Os12g42280 | Guohui Zhu;Nenghui Ye;Jianhua Zhang Glucose-Induced Delay of Seed Germination in Rice is Mediated by the Suppression of ABA Catabolism Rather Than an Enhancement of ABA Biosynthesis Plant and Cell Physiology, 2009, 50(3): 644-651 |
OsPCF8 | Os12g0616400 | LOC_Os12g42190 | CHUNHUA YANG;DAYONG LI;DONGHAI MAO;XUE LIU;CHENGJUN JI;XIAOBING LI;XIANFENG ZHAO;ZHUKUAN CHENG;CAIYAN CHEN;LIHUANG ZHU Overexpression of microRNA319 impacts leaf morphogenesis and leads to enhanced cold tolerance in rice (Oryza sativa L.) Plant, Cell & Environment, 2013, 36(12): 2207-2218 |
OsPID | Os12g0614600 | LOC_Os12g42020 | Yutaka Morita;Junko Kyozuka Characterization of OsPID, the Rice Ortholog of PINOID, and its Possible Involvement in the Control of Polar Auxin Transport Plant and Cell Physiology, 2007, 48(3): 540-549 |
OsARF25 | Os12g0613700 | LOC_Os12g41950 | YanHua Qi;SuiKang Wang;ChenJia Shen;SaiNa Zhang;Yue Chen;YanXia Xu;Yu Liu;YunRong Wu;DeAn Jiang OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa) New Phytologist, 2012, 193(1): 109-120 |
OsTRBF2 | Os12g0613300 | LOC_Os12g41920 | Mi Young Byun;Jong-Pil Hong;Woo Taek Kim Identification and characterization of three telomere repeat-binding factors in rice Biochemical and Biophysical Research Communications, 2008, 372(1): 85-90 |
OsHAP2B | Os12g0613000 | LOC_Os12g41880 | Thiruvengadam Thirumurugan;Yukihiro Ito;Takahiko Kubo;Akiko Serizawa;Nori Kurata Identification, characterization and interaction of HAP family genes in rice Molecular Genetics and Genomics, 2008, 279(3): 279-289 |
OspPLAIIIζ | Os12g0611300 | LOC_Os12g41720 | Guangmeng Liu;Ke Zhang;Jun Ai;Xianjun Deng;Yueyun Hong;Xuemin Wang Patatin-related phospholipase A, pPLAIIIα, modulates the longitudinal growth of vegetative tissues and seeds in rice Journal of Experimental Botany, 2015, 66(21): 6945-6955 |
OMTN3 | Os12g0610600 | LOC_Os12g41680 | Yujie Fang;Kabin Xie;Lizhong Xiong Conserved miR164-targeted NAC genes negatively regulate drought resistance in rice Journal of Experimental Botany, 2014, 65(8): 2119-2135 |
OsCam3 | Os12g0603800 | LOC_Os12g41110 | Aumnart Chinpongpanich;Nuchanat Wutipraditkul;Sarut Thairat;Teerapong Buaboocha Biophysical characterization of calmodulin and calmodulin-like proteins from rice, Oryza sativa L. Acta Biochimica et Biophysica Sinica, 2011, 43(11): 867-876 |
OsbZIP88 | Os12g0601800 | LOC_Os12g40920 | Qian Ji;Liang-sheng Zhang;Yi-fei Wang;Jian Wang Genome-wide analysis of basic leucine zipper transcription factor families in Arabidopsis thaliana, Oryza sativa and Populus trichocarpa Journal of Shanghai University (English Edition), 2009, 13(2): 174-182 |
OsWRKY83 | Os12g0597700 | LOC_Os12g40570 | Christian A. Ross;Yue Liu;Qingxi J. Shen The WRKY Gene Family in Rice (Oryza sativa) Journal of Integrative Plant Biology, 2007, 49(6): 827-842 |
OsUAH | Os12g0597500 | LOC_Os12g40550 | Juan Li;Rui-Ying Qin;Hao Li;Rong-Fang Xu;Ya-Chun Yang;Da-Hu Ni;Hui Ma;Li Li;Peng-Cheng Wei;Jian-Bo Yang Low-Temperature-Induced Expression of Rice Ureidoglycolate Amidohydrolase is Mediated by a C-Repeat/Dehydration Responsive Element that Specifically Interacts with Rice C-Repeat-Binding Factor 3 Frontiers in Plant Science, 2015, 6: 1011 |
HSA1a | Os12g0589400 | LOC_Os12g39880 | Takahiko Kubo;Tomonori Takashi;Motoyuki Ashikari;Atsushi Yoshimura;Nori Kurata Two Tightly Linked Genes at the hsa1 Locus Cause Both F1 and F2 Hybrid Sterility in Rice Molecular Plant, 2016, 9(2): 221-232 |
OsNAAT6 | Os12g0588900 | LOC_Os12g39840 | Haruhiko Inoue;Michiko Takahashi;Takanori Kobayashi;Motofumi Suzuki;Hiromi Nakanishi;Satoshi Mori;Naoko K. Nishizawa Identification and localisation of the rice nicotianamine aminotransferase gene OsNAAT1 expression suggests the site of phytosiderophore synthesis in rice Plant Molecular Biology, 2008, 66(1-2): 193-203 |
CycD5;2 | Os12g0588800 | LOC_Os12g39830 | Honggui La;Jun Li;Zhendong Ji;Yanjun Cheng;Xiuli Li;Shuye Jiang;Prasanna Nori Venkatesh;Srinivasan Ramachandran Genome-wide analysis of cyclin family in rice (Oryza Sativa L.) Molecular Genetics and Genomics, 2006, 275(4): 374-386 |
OsSAPK9 | Os12g0586100 | LOC_Os12g39630 | Mei-Rong Xu;Li-Yu Huang;Fan Zhang;Ling-Hua Zhu;Yong-Li Zhou;Zhi-Kang Li Genome-Wide Phylogenetic Analysis of Stress-Activated Protein Kinase Genes in Rice (OsSAPKs) and Expression Profiling in Response to Xanthomonas oryzae pv. oryzicola Infection Plant Molecular Biology Reporter, 2013, 31(4): 877-885 |
ZFP252 | Os12g0583700 | LOC_Os12g39400 | Dong-Qing Xu;Ji Huang;Shu-Qiao Guo;Xia Yang;Yong-Mei Bao;Hai-Juan Tang;Hong-Sheng Zhang Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.) FEBS Letters, 2008, 582(7): 1037-1043 |
CycA3;2 | Os12g0581800 | LOC_Os12g39210 | Honggui La;Jun Li;Zhendong Ji;Yanjun Cheng;Xiuli Li;Shuye Jiang;Prasanna Nori Venkatesh;Srinivasan Ramachandran Genome-wide analysis of cyclin family in rice (Oryza Sativa L.) Molecular Genetics and Genomics, 2006, 275(4): 374-386 |
ZOS12-7 | Os12g0578800 | LOC_Os12g38960 | Duarte D. Figueiredo;Pedro M. Barros;André M. Cordeiro;Tânia S. Serra;Tiago Lourenço;Subhash Chander;M. Margarida Oliveira;Nelson J. M. Saibo Seven zinc-finger transcription factors are novel regulators of the stress responsive gene OsDREB1B Journal of Experimental Botany, 2012, 63(10): 3643-3656 |
OsMYB91 | Os12g0572000 | LOC_Os12g38400 | Ning Zhu;Saifeng Cheng;Xiaoyun Liu;Hao Du;Mingqiu Dai;Dao-Xiu Zhou;Wenjing Yang;Yu Zhao The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice Plant Science, 2015, 236: 146-156 |
Spl11 | Os12g0570000 | LOC_Os12g38210 | Jinling Liu;Chan Ho Park;Feng He;Minoru Nagano;Mo Wang;Maria Bellizzi;Kai Zhang;Xiaoshan Zeng;Wende Liu;Yuese Ning;Yoji Kawano;Guo-Liang Wang The RhoGAP SPIN6 Associates with SPL11 and OsRac1 and Negatively Regulates Programmed Cell Death and Innate Immunity in Rice PLoS Pathogens, 2015, 11(2): e1004629 |
OsBOR1 | Os12g0566000 | LOC_Os12g37840 | Yuko Nakagawa;Hideki Hanaoka;Masaharu Kobayashi;Kazumaru Miyoshi;Kyoko Miwa;Toru Fujiwara Cell-Type Specificity of the Expression of Os BOR1, a Rice Efflux Boron Transporter Gene, Is Regulated in Response to Boron Availability for Efficient Boron Uptake and Xylem Loading The Plant Cell, 2007, 19(8): 2624-2635 |
OsLOX11 | Os12g0559200 | LOC_Os12g37260 | Soma S. Marla;V. K. Singh LOX genes in blast fungus (Magnaporthe grisea) resistance in rice Functional & Integrative Genomics, 2012, 12(2): 265-275 |
OsDi19-7 | Os12g0556100 | LOC_Os12g36900 | Lili Wang;Changchun Yu;Cong Chen;Chunlan He;Yingguo Zhu;Wenchao Huang Identification of rice Di19 family reveals OsDi19-4 involved in drought resistance Plant Cell Reports, 2014, 33(12): 2047-2062 |
OspPLAIIλ | Os12g0552200 | LOC_Os12g36610 | Guangmeng Liu;Ke Zhang;Jun Ai;Xianjun Deng;Yueyun Hong;Xuemin Wang Patatin-related phospholipase A, pPLAIIIα, modulates the longitudinal growth of vegetative tissues and seeds in rice Journal of Experimental Botany, 2015, 66(21): 6945-6955 |
OspPLAIIκ | Os12g0551600 | LOC_Os12g36530 | Guangmeng Liu;Ke Zhang;Jun Ai;Xianjun Deng;Yueyun Hong;Xuemin Wang Patatin-related phospholipase A, pPLAIIIα, modulates the longitudinal growth of vegetative tissues and seeds in rice Journal of Experimental Botany, 2015, 66(21): 6945-6955 |
OsNDPK2 | Os12g0548300 | LOC_Os12g36194 | Song Mi Cho;Seo Ho Shin;Kwang Sang Kim;Young Cheol Kim;Moo Young Eun;Baik Ho Cho Enhanced Expression of a Gene Encoding a Nucleoside Diphosphate Kinase 1 (OsNDPK1) in Rice Plants upon Infection with Bacterial Pathogens Molecules and Cells, 2004, 18(3): 390-395 |
pms3 | Os12g0545900 | LOC_Os12g36030 | Hai Zhou;Qinjian Liu;Jing Li;Dagang Jiang;Lingyan Zhou;Ping Wu;Sen Lu;Feng Li;Liya Zhu;Zhenlan Liu;Letian Chen;Yao-Guang Liu;Chuxiong Zhuang Photoperiod- and thermo-sensitive genic male sterility in rice are caused by a point mutation in a novel noncoding RNA that produces a small RNA Cell Research, 2012, 22(4): 649-660 |
Osrboh9 | Os12g0541300 | LOC_Os12g35610 | Dongping Zhang;Li Chen;Dahong Li;Bing Lv;Yun Chen;Jingui Chen;XuejiaoYan;Jiansheng Liang OsRACK1 Is Involved in Abscisic Acid- and H2O2-Mediated Signaling to Regulate Seed Germination in Rice (Oryza sativa, L.) PLoS ONE, 2014, 9(5): e97120 |
OsGRX29 | Os12g0538700 | LOC_Os12g35340 | Rohini Garg;Shalu Jhanwar;Akhilesh K. Tyagi;Mukesh Jain Genome-Wide Survey and Expression Analysis Suggest Diverse Roles of Glutaredoxin Gene Family Members During Development and Response to Various Stimuli in Rice DNA Research, 2010, 17(6): 353-367 |
OsGRX28 | Os12g0538600 | LOC_Os12g35330 | Rohini Garg;Shalu Jhanwar;Akhilesh K. Tyagi;Mukesh Jain Genome-Wide Survey and Expression Analysis Suggest Diverse Roles of Glutaredoxin Gene Family Members During Development and Response to Various Stimuli in Rice DNA Research, 2010, 17(6): 353-367 |
OsVIL2 | Os12g0533500 | LOC_Os12g34850 | Jungil Yang;Shinyong Lee;Runlai Hang;Sung-Ryul Kim;Yang-Seok Lee;Xiaofeng Cao;Richard Amasino;Gynheung An OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice The Plant Journal, 2013, 73(4): 566-578 |
TAM1 | Os12g0520200 | LOC_Os12g33610 | Bradley W. Tonnessen;Patricia Manosalva;Jillian M. Lang;Marietta Baraoidan;Alicia Bordeos;Ramil Mauleon;James Oard;Scot Hulbert;Hei Leung;Jan E. Leach Rice phenylalanine ammonia-lyase gene OsPAL4 is associated with broad spectrum disease resistance Plant Molecular Biology, 2015, 87(3): 273-286 |
OsMYB46 | Os12g0515300 | LOC_Os12g33070 | Ruiqin Zhong;Chanhui Lee;Ryan L. McCarthy;Cromwell K. Reeves;Evan G. Jones;Zheng-Hua Ye Transcriptional Activation of Secondary Wall Biosynthesis by Rice and Maize NAC and MYB Transcription Factors Plant and Cell Physiology, 2011, 52(10): 1856-1871 |
SAB23 | Os12g0514400 | LOC_Os12g32980 | Young-Su Seo;Mawsheng Chern;Laura E. Bartley;Muho Han;Ki-Hong Jung;Insuk Lee;Harkamal Walia;Todd Richter;Xia Xu;Peijian Cao;Wei Bai;Rajeshwari Ramanan;Fawn Amonpant;Loganathan Arul;Patrick E. Canlas;Randy Ruan;Chang-Jin Park;Xuewei Chen;Sohyun Hwang;Jong-Seong Jeon;Pamela C. Ronald Towards Establishment of a Rice Stress Response Interactome PLoS Genetics, 2011, 7(4): e1002020 |
OsYUCCA5 | Os12g0512000 | LOC_Os12g32750 | Yuko Yamamoto;Noriko Kamiya;Yoichi Morinaka;Makoto Matsuoka;Takashi Sazuka Auxin Biosynthesis by the YUCCA Genes in Rice Plant Physiology, 2007, 143(3): 1362-1371 |
OsbHLH133 | Os12g0508500 | LOC_Os12g32400 | Lu Wang;Yinghui Ying;Reena Narsai;Lingxiao Ye;Luqing Zheng;Jingluan Tian;James Whelan;Huixia Shou Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa Plant, Cell & Environment, 2013, 36(1): 224-236 |
OsWRKY85 | Os12g0507300 | LOC_Os12g32250 | Christian A. Ross;Yue Liu;Qingxi J. Shen The WRKY Gene Family in Rice (Oryza sativa) Journal of Integrative Plant Biology, 2007, 49(6): 827-842 |
CycA21 | Os12g0502300 | LOC_Os12g31810 | Honggui La;Jun Li;Zhendong Ji;Yanjun Cheng;Xiuli Li;Shuye Jiang;Prasanna Nori Venkatesh;Srinivasan Ramachandran Genome-wide analysis of cyclin family in rice (Oryza Sativa L.) Molecular Genetics and Genomics, 2006, 275(4): 374-386 |
QHB | Os01g0854500 | LOC_Os01g63510 | Isolation and characterization of a rice WUSCHEL-type homeobox gene that is specifically expressed in the central cells of a quiescent center in the root apical meristem |
OsSBP | Os01g0916400 | LOC_Os01g68770 | Enhanced Resistance to Blast Fungus and Bacterial Blight in Transgenic Rice Constitutively Expressing OsSBP, a Rice Homologue of Mammalian Selenium-binding Proteins |
LRK1 | Os02g0154200 | LOC_Os01g63510 | Over-expression of the rice LRK1 gene improves quantitative yield components. |
CYP734A2 | Os02g0204700 | LOC_Os02g11020 | Rice CYP734As function as multisubstrate and multifunctional enzymes in brassinosteroid catabolism. |
OsHPL2 | Os02g0218700 | LOC_Os02g12680 | Role of hydroperoxide lyase in white-backed planthopper (Sogatella furcifera Horváth)-induced resistance to bacterial blight in rice, Oryza sativa L. |
OsDof12 | Os03g0169600 | LOC_Os03g07360 | Functional characterization of rice OsDof12 |
OsAOS2 | Os03g0225900 | LOC_Os03g12500 | Inducible Overexpression of a Rice Allene Oxide Synthase Gene Increases the Endogenous Jasmonic Acid Level, PR Gene Expression, and Host Resistance to Fungal Infection |
RPN10 | Os03g0243300 | LOC_Os03g13970 | OvereXpression of a gene for 26S proteasome subunit RPNIO COnfers enhanced resistance to canavanine, an analog of arginine, in transgenic rice |
OsEIL1 | Os03g0324300 | LOC_Os03g20790 | OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component |
OsIRO3 | Os03g0379300 | LOC_Os03g26210 | Identification of a novel iron regulated basic helix-loop-helix protein involved in Fe homeostasis in Oryza sativa |
SPIN1 | Os03g0815700 | LOC_Os03g60110 | SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice |
OASA1D | Os03g0826500 | LOC_Os03g61120 | High-level tryptophan accumulation in seeds of transgenic rice and its limited effects on agronomic traits and seed metabolite profile |
OsSERK1 | Os04g0457800 | LOC_Os04g38480 | Rice SERK1 gene positively regulates somatic embryogenesis of cultured cell and host defense response against fungal infection |
OsIPT3 | Os05g0311801 | LOC_Os05g24660 | Ectopic expression of KNOTTED1-like homeobox protein induces expression of cytokinin biosynthesis genes in rice |
OsWRKY28 | Os06g0649000 | LOC_Os06g44010 | OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity |
YAB1 | Os07g0160100 | LOC_Os07g06620 | The rice YABBY1 gene is involved in the feedback regulation of gibberellin metabolism |
OsMADS26 | Os08g0112700 | LOC_Os08g02070 | Further characterization of a rice AGL12 group MADS-box gene, OsMADS26 |
OsZIP4 | Os08g0207500 | LOC_Os08g10630 | Overexpression of the OsZIP4 zinc transporter confers disarrangement of zinc distribution in rice plants |
OsISA1 | Os08g0520900 | LOC_Os08g40930 | Functional diversity of isoamylase oligomers: the ISA1 homo-oligomer is essential for amylopectin biosynthesis in rice endosperm |
OsDREB1G | Os08g0545500 | LOC_Os08g43200 | Over-expression of OsDREB genes lead to enhanced drought tolerance in rice |
rFCA | Os09g0123200 | LOC_Os09g03610 | Overexpression of the rFCA RNA recognition motif affects morphologies modifications in rice (Oryza sativa L.) |
OsWRKY62 | Os09g0417800 | LOC_Os09g25070 | OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice |