RiceWiki:TBC

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Every Gene Has A Story !

Gene name RAP ID MSU ID Reference Title
OsSOS1 Os12g0641100 LOC_Os12g44360 Huan Wang;Meishan Zhang;Rui Guo;Decheng Shi;Bao Liu;Xiuyun Lin;Chunwu Yan Effects of salt stress on ion balance and nitrogen metabolism of old and young leaves in rice (Oryza sativa L.)BMC Plant Biology, 2012, 12: 194
OsCCD1 Os12g0640600 LOC_Os12g44310 Andrea Ilg;Qiuju Yu;Patrick Schaub;Peter Beyer;Salim Al-Babili Overexpression of the rice carotenoid cleavage dioxygenase 1 gene in Golden Rice endosperm suggests apocarotenoids as substrates in planta Planta, 2010, 232(3): 691-699
OsPTR2 Os12g0638200 LOC_Os12g44100 Yuge Li;Jie Ouyang;Ya-Yun Wang;Rui Hu;Kuaifei Xia;Jun Duan;Yaqin Wang;Yi-Fang Tsay;Mingyong Zhang Disruption of the rice nitrate transporter OsNPF2.2 hinders root-to-shoot nitrate transport and vascular development Scientific Reports, 2015, 5: 9635
Osgr-rbp4 Os12g0632000 LOC_Os12g43600 Chandan Sahi;Manu Agarwal;Amanjot Singha;Anil Grover Molecular characterization of a novel isoform of rice (Oryza sativa L.) glycine rich-RNA binding protein and evidence for its involvement in high temperature stress response Plant Science, 2007, 173(2): 144-155
TOND1 Os12g0630100 LOC_Os12g43440 Yangjun Zhang;Lubin Tan;Zuofeng Zhu;Lixing Yuan;Daoxin Xie;Chuanqing Sun TOND1 confers tolerance to nitrogen deficiency in rice The Plant Journal, 2014,
OsSpo11-4 Os12g0622500 LOC_Os12g42760 Yoshinori Shingu;Takeshi Tokai;Yasuo Agawa;Kentaro Toyota;Selina Ahamed;Makiko Kawagishi-Kobayashi;Akira Komatsu;Tsutomu Mikawa;Masa-Toshi Yamamoto;Kyo Wakasa;Takehiko Shibata;Kohji Kusano The double-stranded break-forming activity of plant SPO11s and a novel rice SPO11 revealed by a Drosophila bioassay BMC Microbiology, 2012, 13: 1
OsYABBY6 Os12g0621100 LOC_Os12g42610 Taiyo Toriba;Kohsuke Harada;Atsushi Takamura;Hidemitsu Nakamura;Hiroaki Ichikawa;Takuya Suzaki;Hiro-Yuki Hirano Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1 Molecular Genetics and Genomics, 2007, 277(5): 457-468
OsHAP2F Os12g0618600 LOC_Os12g42400 Thiruvengadam Thirumurugan;Yukihiro Ito;Takahiko Kubo;Akiko Serizawa;Nori Kurata Identification, characterization and interaction of HAP family genes in rice Molecular Genetics and Genomics, 2008, 279(3): 279-289
OsPPKL3 Os12g0617900 LOC_Os12g42310 Xiaojun Zhang;Jianfei Wang;Ji Huang;Hongxia Lan;Cailin Wang;Congfei Yin;Yunyu Wu;Haijuan Tang;Qian Qian;Jiayang Li;Hongsheng Zhang Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice Proceedings of the National Academy of Sciences, 2012, 109(52): 21534-21539
OsNCED5 Os12g0617400 LOC_Os12g42280 Guohui Zhu;Nenghui Ye;Jianhua Zhang Glucose-Induced Delay of Seed Germination in Rice is Mediated by the Suppression of ABA Catabolism Rather Than an Enhancement of ABA Biosynthesis Plant and Cell Physiology, 2009, 50(3): 644-651
OsPCF8 Os12g0616400 LOC_Os12g42190 CHUNHUA YANG;DAYONG LI;DONGHAI MAO;XUE LIU;CHENGJUN JI;XIAOBING LI;XIANFENG ZHAO;ZHUKUAN CHENG;CAIYAN CHEN;LIHUANG ZHU Overexpression of microRNA319 impacts leaf morphogenesis and leads to enhanced cold tolerance in rice (Oryza sativa L.) Plant, Cell & Environment, 2013, 36(12): 2207-2218
OsPID Os12g0614600 LOC_Os12g42020 Yutaka Morita;Junko Kyozuka Characterization of OsPID, the Rice Ortholog of PINOID, and its Possible Involvement in the Control of Polar Auxin Transport Plant and Cell Physiology, 2007, 48(3): 540-549
OsARF25 Os12g0613700 LOC_Os12g41950 YanHua Qi;SuiKang Wang;ChenJia Shen;SaiNa Zhang;Yue Chen;YanXia Xu;Yu Liu;YunRong Wu;DeAn Jiang OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa) New Phytologist, 2012, 193(1): 109-120
OsTRBF2 Os12g0613300 LOC_Os12g41920 Mi Young Byun;Jong-Pil Hong;Woo Taek Kim Identification and characterization of three telomere repeat-binding factors in rice Biochemical and Biophysical Research Communications, 2008, 372(1): 85-90
OsHAP2B Os12g0613000 LOC_Os12g41880 Thiruvengadam Thirumurugan;Yukihiro Ito;Takahiko Kubo;Akiko Serizawa;Nori Kurata Identification, characterization and interaction of HAP family genes in rice Molecular Genetics and Genomics, 2008, 279(3): 279-289
OspPLAIIIζ Os12g0611300 LOC_Os12g41720 Guangmeng Liu;Ke Zhang;Jun Ai;Xianjun Deng;Yueyun Hong;Xuemin Wang Patatin-related phospholipase A, pPLAIIIα, modulates the longitudinal growth of vegetative tissues and seeds in rice Journal of Experimental Botany, 2015, 66(21): 6945-6955
OMTN3 Os12g0610600 LOC_Os12g41680 Yujie Fang;Kabin Xie;Lizhong Xiong Conserved miR164-targeted NAC genes negatively regulate drought resistance in rice Journal of Experimental Botany, 2014, 65(8): 2119-2135
OsCam3 Os12g0603800 LOC_Os12g41110 Aumnart Chinpongpanich;Nuchanat Wutipraditkul;Sarut Thairat;Teerapong Buaboocha Biophysical characterization of calmodulin and calmodulin-like proteins from rice, Oryza sativa L. Acta Biochimica et Biophysica Sinica, 2011, 43(11): 867-876
OsbZIP88 Os12g0601800 LOC_Os12g40920 Qian Ji;Liang-sheng Zhang;Yi-fei Wang;Jian Wang Genome-wide analysis of basic leucine zipper transcription factor families in Arabidopsis thaliana, Oryza sativa and Populus trichocarpa Journal of Shanghai University (English Edition), 2009, 13(2): 174-182
OsWRKY83 Os12g0597700 LOC_Os12g40570 Christian A. Ross;Yue Liu;Qingxi J. Shen The WRKY Gene Family in Rice (Oryza sativa) Journal of Integrative Plant Biology, 2007, 49(6): 827-842
OsUAH Os12g0597500 LOC_Os12g40550 Juan Li;Rui-Ying Qin;Hao Li;Rong-Fang Xu;Ya-Chun Yang;Da-Hu Ni;Hui Ma;Li Li;Peng-Cheng Wei;Jian-Bo Yang Low-Temperature-Induced Expression of Rice Ureidoglycolate Amidohydrolase is Mediated by a C-Repeat/Dehydration Responsive Element that Specifically Interacts with Rice C-Repeat-Binding Factor 3 Frontiers in Plant Science, 2015, 6: 1011
HSA1a Os12g0589400 LOC_Os12g39880 Takahiko Kubo;Tomonori Takashi;Motoyuki Ashikari;Atsushi Yoshimura;Nori Kurata Two Tightly Linked Genes at the hsa1 Locus Cause Both F1 and F2 Hybrid Sterility in Rice Molecular Plant, 2016, 9(2): 221-232
OsNAAT6 Os12g0588900 LOC_Os12g39840 Haruhiko Inoue;Michiko Takahashi;Takanori Kobayashi;Motofumi Suzuki;Hiromi Nakanishi;Satoshi Mori;Naoko K. Nishizawa Identification and localisation of the rice nicotianamine aminotransferase gene OsNAAT1 expression suggests the site of phytosiderophore synthesis in rice Plant Molecular Biology, 2008, 66(1-2): 193-203
CycD5;2 Os12g0588800 LOC_Os12g39830 Honggui La;Jun Li;Zhendong Ji;Yanjun Cheng;Xiuli Li;Shuye Jiang;Prasanna Nori Venkatesh;Srinivasan Ramachandran Genome-wide analysis of cyclin family in rice (Oryza Sativa L.) Molecular Genetics and Genomics, 2006, 275(4): 374-386
OsSAPK9 Os12g0586100 LOC_Os12g39630 Mei-Rong Xu;Li-Yu Huang;Fan Zhang;Ling-Hua Zhu;Yong-Li Zhou;Zhi-Kang Li Genome-Wide Phylogenetic Analysis of Stress-Activated Protein Kinase Genes in Rice (OsSAPKs) and Expression Profiling in Response to Xanthomonas oryzae pv. oryzicola Infection Plant Molecular Biology Reporter, 2013, 31(4): 877-885
ZFP252 Os12g0583700 LOC_Os12g39400 Dong-Qing Xu;Ji Huang;Shu-Qiao Guo;Xia Yang;Yong-Mei Bao;Hai-Juan Tang;Hong-Sheng Zhang Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.) FEBS Letters, 2008, 582(7): 1037-1043
CycA3;2 Os12g0581800 LOC_Os12g39210 Honggui La;Jun Li;Zhendong Ji;Yanjun Cheng;Xiuli Li;Shuye Jiang;Prasanna Nori Venkatesh;Srinivasan Ramachandran Genome-wide analysis of cyclin family in rice (Oryza Sativa L.) Molecular Genetics and Genomics, 2006, 275(4): 374-386
ZOS12-7 Os12g0578800 LOC_Os12g38960 Duarte D. Figueiredo;Pedro M. Barros;André M. Cordeiro;Tânia S. Serra;Tiago Lourenço;Subhash Chander;M. Margarida Oliveira;Nelson J. M. Saibo Seven zinc-finger transcription factors are novel regulators of the stress responsive gene OsDREB1B Journal of Experimental Botany, 2012, 63(10): 3643-3656
OsMYB91 Os12g0572000 LOC_Os12g38400 Ning Zhu;Saifeng Cheng;Xiaoyun Liu;Hao Du;Mingqiu Dai;Dao-Xiu Zhou;Wenjing Yang;Yu Zhao The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice Plant Science, 2015, 236: 146-156
Spl11 Os12g0570000 LOC_Os12g38210 Jinling Liu;Chan Ho Park;Feng He;Minoru Nagano;Mo Wang;Maria Bellizzi;Kai Zhang;Xiaoshan Zeng;Wende Liu;Yuese Ning;Yoji Kawano;Guo-Liang Wang The RhoGAP SPIN6 Associates with SPL11 and OsRac1 and Negatively Regulates Programmed Cell Death and Innate Immunity in Rice PLoS Pathogens, 2015, 11(2): e1004629
OsBOR1 Os12g0566000 LOC_Os12g37840 Yuko Nakagawa;Hideki Hanaoka;Masaharu Kobayashi;Kazumaru Miyoshi;Kyoko Miwa;Toru Fujiwara Cell-Type Specificity of the Expression of Os BOR1, a Rice Efflux Boron Transporter Gene, Is Regulated in Response to Boron Availability for Efficient Boron Uptake and Xylem Loading The Plant Cell, 2007, 19(8): 2624-2635
OsLOX11 Os12g0559200 LOC_Os12g37260 Soma S. Marla;V. K. Singh LOX genes in blast fungus (Magnaporthe grisea) resistance in rice Functional & Integrative Genomics, 2012, 12(2): 265-275
OsDi19-7 Os12g0556100 LOC_Os12g36900 Lili Wang;Changchun Yu;Cong Chen;Chunlan He;Yingguo Zhu;Wenchao Huang Identification of rice Di19 family reveals OsDi19-4 involved in drought resistance Plant Cell Reports, 2014, 33(12): 2047-2062
OspPLAIIλ Os12g0552200 LOC_Os12g36610 Guangmeng Liu;Ke Zhang;Jun Ai;Xianjun Deng;Yueyun Hong;Xuemin Wang Patatin-related phospholipase A, pPLAIIIα, modulates the longitudinal growth of vegetative tissues and seeds in rice Journal of Experimental Botany, 2015, 66(21): 6945-6955
OspPLAIIκ Os12g0551600 LOC_Os12g36530 Guangmeng Liu;Ke Zhang;Jun Ai;Xianjun Deng;Yueyun Hong;Xuemin Wang Patatin-related phospholipase A, pPLAIIIα, modulates the longitudinal growth of vegetative tissues and seeds in rice Journal of Experimental Botany, 2015, 66(21): 6945-6955
OsNDPK2 Os12g0548300 LOC_Os12g36194 Song Mi Cho;Seo Ho Shin;Kwang Sang Kim;Young Cheol Kim;Moo Young Eun;Baik Ho Cho Enhanced Expression of a Gene Encoding a Nucleoside Diphosphate Kinase 1 (OsNDPK1) in Rice Plants upon Infection with Bacterial Pathogens Molecules and Cells, 2004, 18(3): 390-395
pms3 Os12g0545900 LOC_Os12g36030 Hai Zhou;Qinjian Liu;Jing Li;Dagang Jiang;Lingyan Zhou;Ping Wu;Sen Lu;Feng Li;Liya Zhu;Zhenlan Liu;Letian Chen;Yao-Guang Liu;Chuxiong Zhuang Photoperiod- and thermo-sensitive genic male sterility in rice are caused by a point mutation in a novel noncoding RNA that produces a small RNA Cell Research, 2012, 22(4): 649-660
Osrboh9 Os12g0541300 LOC_Os12g35610 Dongping Zhang;Li Chen;Dahong Li;Bing Lv;Yun Chen;Jingui Chen;XuejiaoYan;Jiansheng Liang OsRACK1 Is Involved in Abscisic Acid- and H2O2-Mediated Signaling to Regulate Seed Germination in Rice (Oryza sativa, L.) PLoS ONE, 2014, 9(5): e97120
OsGRX29 Os12g0538700 LOC_Os12g35340 Rohini Garg;Shalu Jhanwar;Akhilesh K. Tyagi;Mukesh Jain Genome-Wide Survey and Expression Analysis Suggest Diverse Roles of Glutaredoxin Gene Family Members During Development and Response to Various Stimuli in Rice DNA Research, 2010, 17(6): 353-367
OsGRX28 Os12g0538600 LOC_Os12g35330 Rohini Garg;Shalu Jhanwar;Akhilesh K. Tyagi;Mukesh Jain Genome-Wide Survey and Expression Analysis Suggest Diverse Roles of Glutaredoxin Gene Family Members During Development and Response to Various Stimuli in Rice DNA Research, 2010, 17(6): 353-367
OsVIL2 Os12g0533500 LOC_Os12g34850 Jungil Yang;Shinyong Lee;Runlai Hang;Sung-Ryul Kim;Yang-Seok Lee;Xiaofeng Cao;Richard Amasino;Gynheung An OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice The Plant Journal, 2013, 73(4): 566-578
TAM1 Os12g0520200 LOC_Os12g33610 Bradley W. Tonnessen;Patricia Manosalva;Jillian M. Lang;Marietta Baraoidan;Alicia Bordeos;Ramil Mauleon;James Oard;Scot Hulbert;Hei Leung;Jan E. Leach Rice phenylalanine ammonia-lyase gene OsPAL4 is associated with broad spectrum disease resistance Plant Molecular Biology, 2015, 87(3): 273-286
OsMYB46 Os12g0515300 LOC_Os12g33070 Ruiqin Zhong;Chanhui Lee;Ryan L. McCarthy;Cromwell K. Reeves;Evan G. Jones;Zheng-Hua Ye Transcriptional Activation of Secondary Wall Biosynthesis by Rice and Maize NAC and MYB Transcription Factors Plant and Cell Physiology, 2011, 52(10): 1856-1871
SAB23 Os12g0514400 LOC_Os12g32980 Young-Su Seo;Mawsheng Chern;Laura E. Bartley;Muho Han;Ki-Hong Jung;Insuk Lee;Harkamal Walia;Todd Richter;Xia Xu;Peijian Cao;Wei Bai;Rajeshwari Ramanan;Fawn Amonpant;Loganathan Arul;Patrick E. Canlas;Randy Ruan;Chang-Jin Park;Xuewei Chen;Sohyun Hwang;Jong-Seong Jeon;Pamela C. Ronald Towards Establishment of a Rice Stress Response Interactome PLoS Genetics, 2011, 7(4): e1002020
OsYUCCA5 Os12g0512000 LOC_Os12g32750 Yuko Yamamoto;Noriko Kamiya;Yoichi Morinaka;Makoto Matsuoka;Takashi Sazuka Auxin Biosynthesis by the YUCCA Genes in Rice Plant Physiology, 2007, 143(3): 1362-1371
OsbHLH133 Os12g0508500 LOC_Os12g32400 Lu Wang;Yinghui Ying;Reena Narsai;Lingxiao Ye;Luqing Zheng;Jingluan Tian;James Whelan;Huixia Shou Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa Plant, Cell & Environment, 2013, 36(1): 224-236
OsWRKY85 Os12g0507300 LOC_Os12g32250 Christian A. Ross;Yue Liu;Qingxi J. Shen The WRKY Gene Family in Rice (Oryza sativa) Journal of Integrative Plant Biology, 2007, 49(6): 827-842
CycA21 Os12g0502300 LOC_Os12g31810 Honggui La;Jun Li;Zhendong Ji;Yanjun Cheng;Xiuli Li;Shuye Jiang;Prasanna Nori Venkatesh;Srinivasan Ramachandran Genome-wide analysis of cyclin family in rice (Oryza Sativa L.) Molecular Genetics and Genomics, 2006, 275(4): 374-386
QHB Os01g0854500 LOC_Os01g63510 Isolation and characterization of a rice WUSCHEL-type homeobox gene that is specifically expressed in the central cells of a quiescent center in the root apical meristem
OsSBP Os01g0916400 LOC_Os01g68770 Enhanced Resistance to Blast Fungus and Bacterial Blight in Transgenic Rice Constitutively Expressing OsSBP, a Rice Homologue of Mammalian Selenium-binding Proteins
LRK1 Os02g0154200 LOC_Os01g63510 Over-expression of the rice LRK1 gene improves quantitative yield components.
CYP734A2 Os02g0204700 LOC_Os02g11020 Rice CYP734As function as multisubstrate and multifunctional enzymes in brassinosteroid catabolism.
OsHPL2 Os02g0218700 LOC_Os02g12680 Role of hydroperoxide lyase in white-backed planthopper (Sogatella furcifera Horváth)-induced resistance to bacterial blight in rice, Oryza sativa L.
OsDof12 Os03g0169600 LOC_Os03g07360 Functional characterization of rice OsDof12
OsAOS2 Os03g0225900 LOC_Os03g12500 Inducible Overexpression of a Rice Allene Oxide Synthase Gene Increases the Endogenous Jasmonic Acid Level, PR Gene Expression, and Host Resistance to Fungal Infection
RPN10 Os03g0243300 LOC_Os03g13970 OvereXpression of a gene for 26S proteasome subunit RPNIO COnfers enhanced resistance to canavanine, an analog of arginine, in transgenic rice
OsEIL1 Os03g0324300 LOC_Os03g20790 OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component
OsIRO3 Os03g0379300 LOC_Os03g26210 Identification of a novel iron regulated basic helix-loop-helix protein involved in Fe homeostasis in Oryza sativa
SPIN1 Os03g0815700 LOC_Os03g60110 SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice
OASA1D Os03g0826500 LOC_Os03g61120 High-level tryptophan accumulation in seeds of transgenic rice and its limited effects on agronomic traits and seed metabolite profile
OsSERK1 Os04g0457800 LOC_Os04g38480 Rice SERK1 gene positively regulates somatic embryogenesis of cultured cell and host defense response against fungal infection
OsIPT3 Os05g0311801 LOC_Os05g24660 Ectopic expression of KNOTTED1-like homeobox protein induces expression of cytokinin biosynthesis genes in rice
OsWRKY28 Os06g0649000 LOC_Os06g44010 OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity
YAB1 Os07g0160100 LOC_Os07g06620 The rice YABBY1 gene is involved in the feedback regulation of gibberellin metabolism
OsMADS26 Os08g0112700 LOC_Os08g02070 Further characterization of a rice AGL12 group MADS-box gene, OsMADS26
OsZIP4 Os08g0207500 LOC_Os08g10630 Overexpression of the OsZIP4 zinc transporter confers disarrangement of zinc distribution in rice plants
OsISA1 Os08g0520900 LOC_Os08g40930 Functional diversity of isoamylase oligomers: the ISA1 homo-oligomer is essential for amylopectin biosynthesis in rice endosperm
OsDREB1G Os08g0545500 LOC_Os08g43200 Over-expression of OsDREB genes lead to enhanced drought tolerance in rice
rFCA Os09g0123200 LOC_Os09g03610 Overexpression of the rFCA RNA recognition motif affects morphologies modifications in rice (Oryza sativa L.)
OsWRKY62 Os09g0417800 LOC_Os09g25070 OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice
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